Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1512 ATGAGAAAAATTAGTGTCTTGTACTATACTACTGCTATAAGGAAGATGGGTTGTGCTTGTACAAAGTCCTCGGCAGTTGAAAATAGCCGGGAGGACAGCTCGAACGACAGATTCACATCAAGCAGACGGTTATCATCATCATTACAAAAGGCTTTCAGATTGGAATCATCAAGAAGACATGAAGAGTTTAAGATTAGTTCACAGAGATTTTCACAAATACTGTATTTTGATGATACCAAGGTTTCCTTGCGCGACAGAAAATTCCACGGTCCAAACCGGGTCCATGACGATCCAATCAAAAATCGCAATTTGGATACCGTTGTTATGCCGGAAAAGAAGAAGTTGGAGACAGTTTCTGTAGACCATCCAGGTAAAGGGAGTGTCCCTAAGGCTTTGGAAGGAGAACAAGTAGCAGCAGGGTGGCCTACATGGCTCTCTGCCGTTGCAGGCGAAGCATTAAAGGGATGGCTACCTCGTCGAGCCGACACTTTTGAGAAGCTCGAAAAAATTGGCCAAGGAACTTACAGTAGCGTGTACAGGGCTCGAGATATGATTCATGATAAGATAGTCGCACTAAAAAGAGTTCGTTTCGATAACCTTGATGTGGAGAGTCTCAAGTTTATGGCGAGGGAAATCCTTATATTGCGTAAACTTGACCATCCCAATGTAGTAAAGCTCGAAGGCATAATAACAGCACCGAGGACTTGTAGCTTGTACCTTGTTTTCGAGTATATGGAACATGATCTTACCGGACTCGCCACAAATCCTAATATCAATCTCACAGAACCTCAGGTCAAATGTTTTATGCAACAACTTCTAAGAGGGCTTGATTATTGTCACAGCCATGGCGTTCTTCATCGTGACATAAAGGGATCGAATTTACTAATCAATAACGGTGGAATACTAAAGATAGCGGATTTTGGTTTAGCAAGTTTTTTCGACCCTCATATGAGTACTGAATTGACAAGCCGAGTGGTAACTCTTTGGTATAGACCACCTGAGCTTTTACTTGGAGATTCCCGCTATGGAATTGCAGTTGACTTATGGAGTGCAGGTTGCATATTAGCAGAGTTATATACTGGCAAGCCTATCTTACCTGGAAAAACAGAGGTGGAACAATTGCATAAAATTTTCAAGCTTTGTGGCTCACCAGCTGACGATTATTGGAGAAAACTAGACTCGCCTCATTCAAAAGGCTTCAAGCCAGCTCAGCCTTATAGGCGATGTGTTATGGAAACTTTTAAGGATTTACCGGCTGAGGTTATTGGGTTAGTGGATGCTTTGCTTTCTATAGATCCGGCATGTCGAGGAACAGCAGCTATTGCTCTCAAGAATGAGTTATTTAGGACAAATCCTCTTGCTTGCACTCCTTCGAGTTTGCCTGAATATCCTCCGAGCAAAGAGATTGACACGAAAATGCGCGAAGAGGGATGCAGAAGGCCGGAAAAGGCTTGGATCAAGGACACGAAAGCGAAAATGGAAGGAAAACTAGCAAAAGAATCTCAGAGAAAACATGGGCAGGCCACCTCAAAGACAGTAAGTGAACCGTTCAATCCTCATGGAAAGGAACCGGTGTCCGGATTTCTTGTTTTTCCACCTAAACAACCAGGAGGTCCGAAAGAAGTTTCAAACAGAGCTAACCTGAAGACATCATCCTATATCGACAGAGATAGAGCCGGCCCTTCACAGCCAGTAGGAGTTGCAGATTCTTATCAGCAATCTCATGGGCCGAAGGGAAACAATATTTATGCATCGGGTCCATTACTTGGTGCATCAAACAAGCCGGATAAGAAGCTTAAAGGACACGACAGTAAGATTGGAGAATCCAGCCGGCAATCAAGATATGAGAATGTGTTCGATAACCACTTGAATCAGGCAACAAGAAATAGTACGTTAGTAGTCTAG 1905 43.25 MRKISVLYYTTAIRKMGCACTKSSAVENSREDSSNDRFTSSRRLSSSLQKAFRLESSRRHEEFKISSQRFSQILYFDDTKVSLRDRKFHGPNRVHDDPIKNRNLDTVVMPEKKKLETVSVDHPGKGSVPKALEGEQVAAGWPTWLSAVAGEALKGWLPRRADTFEKLEKIGQGTYSSVYRARDMIHDKIVALKRVRFDNLDVESLKFMAREILILRKLDHPNVVKLEGIITAPRTCSLYLVFEYMEHDLTGLATNPNINLTEPQVKCFMQQLLRGLDYCHSHGVLHRDIKGSNLLINNGGILKIADFGLASFFDPHMSTELTSRVVTLWYRPPELLLGDSRYGIAVDLWSAGCILAELYTGKPILPGKTEVEQLHKIFKLCGSPADDYWRKLDSPHSKGFKPAQPYRRCVMETFKDLPAEVIGLVDALLSIDPACRGTAAIALKNELFRTNPLACTPSSLPEYPPSKEIDTKMREEGCRRPEKAWIKDTKAKMEGKLAKESQRKHGQATSKTVSEPFNPHGKEPVSGFLVFPPKQPGGPKEVSNRANLKTSSYIDRDRAGPSQPVGVADSYQQSHGPKGNNIYASGPLLGASNKPDKKLKGHDSKIGESSRQSRYENVFDNHLNQATRNSTLVV 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11426498 11429520 + Conep08aG0156000.1 Cone8ag1512 444061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1512 634 CDD STKc_CDK9_like 164 448 - -
Cone8ag1512 634 SUPERFAMILY Protein kinase-like (PK-like) 158 452 IPR011009 -
Cone8ag1512 634 PANTHER CELL DIVISION PROTEIN KINASE 163 448 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone8ag1512 634 Pfam Protein kinase domain 164 447 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1512 634 FunFam probable serine/threonine-protein kinase At1g54610 151 246 - -
Cone8ag1512 634 SMART serkin_6 164 448 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1512 634 MobiDBLite consensus disorder prediction 595 610 - -
Cone8ag1512 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 284 296 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag1512 634 ProSitePatterns Protein kinases ATP-binding region signature. 170 193 IPR017441 GO:0005524(InterPro)
Cone8ag1512 634 Gene3D Phosphorylase Kinase; domain 1 151 246 - -
Cone8ag1512 634 MobiDBLite consensus disorder prediction 611 634 - -
Cone8ag1512 634 FunFam probable serine/threonine-protein kinase At1g54610 247 488 - -
Cone8ag1512 634 Gene3D Transferase(Phosphotransferase) domain 1 247 487 - -
Cone8ag1512 634 ProSiteProfiles Protein kinase domain profile. 164 448 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1512 634 MobiDBLite consensus disorder prediction 566 580 - -
Cone8ag1512 634 MobiDBLite consensus disorder prediction 491 506 - -
Cone8ag1512 634 MobiDBLite consensus disorder prediction 491 634 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1512 Cone-Chr8:11426498 Cone9ag1212 Cone-Chr9:8784788 2.48E-51 dispersed
Cone10ag1351 Cone-Chr10:10524409 Cone8ag1512 Cone-Chr8:11426498 7.79E-220 wgd
Cone12ag1466 Cone-Chr12:10498908 Cone8ag1512 Cone-Chr8:11426498 0 wgd
Cone14ag1063 Cone-Chr14:8962512 Cone8ag1512 Cone-Chr8:11426498 3.22E-193 wgd
Cone3ag1420 Cone-Chr3:32999063 Cone8ag1512 Cone-Chr8:11426498 4.48E-186 wgd
Cone6ag0146 Cone-Chr6:740829 Cone8ag1512 Cone-Chr8:11426498 1.01E-198 wgd
Cone8ag1512 Cone-Chr8:11426498 Cone9ag0171 Cone-Chr9:760275 2.75E-203 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83142 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1512 - - - 0.0