Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1519 ATGATCACTGGCAGTACTGGCAGAGAGATCCTTCACAAGATGAAGGTGAAAGCTTTATGCTCATCAACGCCAGATCAGACAGGAAAATCAGGCAAAAGCAAATCATCGTCGATGAAGAAGATCACACACGGATATCACCTGGTGAAGGGAAAAGCAAATCACGCCATGGAAGACTACGTCGTATCCGAGTTCAAGAAAGTTAAAGACAACGAGTTAGGCCTCTTCGCCATCTTCGACGGCCATTTGGGCCACAACGTCCCAAATTACTTGCAACGCCACCTGTTCGACAATATTCTCAAAGAACCTGGTTTCTGGTCCGACACAGAGAGTGCTATAAGGAAGGCTTACAAGAAGACAGACGAAGAGATATTGAGCCAAGTTTCGAAGTTAGGCAAGGGAGGCTCGACGGCAGTCACGGCAATACTGTTCAACGGCCAGAAGTTTGTGATAGCAAATGTCGGAGATTCTCGAGCCGTTATATGCAAGAACGGTGTGGCTAAACAGTTATCGGTTGACCACGAGCCTAGCCGCGAAAGGAGACTGATCGAGAGCCGTGGCGGCTTCGTCTCTAACCTTCCGGGTGATGTTCCACGTGTCGATGGACAGCTGGCAGTAGCTAGAGCGTTTGGTGATAAGAGCTTGAAGGTTCACCTGACCTCTGAACCTGATTTGGCTGTTGAATTGGTTGATCCAACTGTTGAGTTCATCATTTTGGCAAGTGATGGGATTTGGAAGGTGGTGTCGAACCAAGAAGCAGTGGATAGTATTTGGCACATCAAGGATGCTCAGTTAGCGGCCAAGAGCTTGATAGAGTTGGCACTTTCTAGGACAAGCAAGGACGACATATCGTGTATAGTAGTAAGGTTTCATACATAG 876 47.6 MITGSTGREILHKMKVKALCSSTPDQTGKSGKSKSSSMKKITHGYHLVKGKANHAMEDYVVSEFKKVKDNELGLFAIFDGHLGHNVPNYLQRHLFDNILKEPGFWSDTESAIRKAYKKTDEEILSQVSKLGKGGSTAVTAILFNGQKFVIANVGDSRAVICKNGVAKQLSVDHEPSRERRLIESRGGFVSNLPGDVPRVDGQLAVARAFGDKSLKVHLTSEPDLAVELVDPTVEFIILASDGIWKVVSNQEAVDSIWHIKDAQLAAKSLIELALSRTSKDDISCIVVRFHT 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11461738 11463001 + Conep08aG0156800.1 Cone8ag1519 444068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1519 291 SMART PP2C_4 32 287 IPR001932 -
Cone8ag1519 291 SMART PP2C_SIG_2 51 289 IPR001932 -
Cone8ag1519 291 FunFam Probable protein phosphatase 2C 39 31 290 - -
Cone8ag1519 291 Pfam Protein phosphatase 2C 52 282 IPR001932 -
Cone8ag1519 291 ProSiteProfiles PPM-type phosphatase domain profile. 42 289 IPR001932 -
Cone8ag1519 291 CDD PP2Cc 43 289 IPR001932 -
Cone8ag1519 291 PANTHER PROTEIN PHOSPHATASE 36 287 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone8ag1519 291 SUPERFAMILY PP2C-like 35 290 IPR036457 -
Cone8ag1519 291 Gene3D - 20 291 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1335 Cone-Chr4:10921634 Cone8ag1519 Cone-Chr8:11461738 2.61E-111 dispersed
Cone7ag1594 Cone-Chr7:10900747 Cone8ag1519 Cone-Chr8:11461738 6.20E-112 dispersed
Cone7ag1645 Cone-Chr7:11098796 Cone8ag1519 Cone-Chr8:11461738 1.61E-63 dispersed
Cone8ag0907 Cone-Chr8:8797371 Cone8ag1519 Cone-Chr8:11461738 2.85E-31 dispersed
Cone8ag1519 Cone-Chr8:11461738 Cone9ag0849 Cone-Chr9:4151370 7.79E-31 dispersed
Cone15ag0169 Cone-Chr15:816568 Cone8ag1519 Cone-Chr8:11461738 1.13E-34 transposed
Cone6ag0160 Cone-Chr6:787673 Cone8ag1519 Cone-Chr8:11461738 2.65E-135 wgd
Cone8ag1519 Cone-Chr8:11461738 Cone9ag0184 Cone-Chr9:805263 5.89E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1519 K17506 - cit:102608973 430.254