Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1552 ATGAAGCTTGAACAGAACGACGAACAGTCCGAACAGATGTGCAGGACGATCGAGGTCGATGTGGTCGATCACCATCGGACTGTGCCGCAAACAGTTGTGATCGCCGGAGAAGAATTTGAAAGGGGTGGAGAGGACCTCTTCATACCTCCGCTTAACTTCGCCATGGTCGACTCTGGCATTTTCCGCTCCGGATTCCCGGACTCTAATAACTTCTCCTTCCTTCAAACCCTAGGCCTCCGCTCCATTATATGTATGTGTTCGGAGCCGTATCCAGAGGCAAACATGGAGTTTCTCAAGTCTAATGGAATCAGATTATTTCAATTCGGGATCGAAGGTTATAAGGAGCCTTTTGTAAACATCCCAGAGGATACAATTCGAGAAGCACTTAAAGTCCTGCTTGACGTGAGGAATCACCCGGTTCTAATACATTGTAAACGAGGAAAGCATCGAACTGGTTGCGTAGTTGGATGCTTGAGAAAACTTCAGAGGTGGTGCCTCTCATCAGTTTTCGACGAGTACCAGCGTTTTGCAGCTGCCAAAGCAAGAGTTGCGGATCAGAGGTTCATGGAATTGTTTGACGTTTATAGCTGA 591 47.38 MKLEQNDEQSEQMCRTIEVDVVDHHRTVPQTVVIAGEEFERGGEDLFIPPLNFAMVDSGIFRSGFPDSNNFSFLQTLGLRSIICMCSEPYPEANMEFLKSNGIRLFQFGIEGYKEPFVNIPEDTIREALKVLLDVRNHPVLIHCKRGKHRTGCVVGCLRKLQRWCLSSVFDEYQRFAAAKARVADQRFMELFDVYS 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11633645 11636149 - Conep08aG0160500.1 Cone8ag1552 444101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1552 196 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 48 195 IPR029021 -
Cone8ag1552 196 ProSitePatterns Tyrosine specific protein phosphatases active site. 142 152 IPR016130 GO:0016311(InterPro)
Cone8ag1552 196 CDD PFA-DSP_Siw14 46 193 - -
Cone8ag1552 196 PRINTS Plant and fungal dual specificity phosphatase signature 103 117 IPR020428 GO:0016791(InterPro)
Cone8ag1552 196 PRINTS Plant and fungal dual specificity phosphatase signature 47 64 IPR020428 GO:0016791(InterPro)
Cone8ag1552 196 PRINTS Plant and fungal dual specificity phosphatase signature 84 97 IPR020428 GO:0016791(InterPro)
Cone8ag1552 196 PRINTS Plant and fungal dual specificity phosphatase signature 120 134 IPR020428 GO:0016791(InterPro)
Cone8ag1552 196 Pfam Tyrosine phosphatase family 48 194 IPR004861 -
Cone8ag1552 196 ProSiteProfiles Dual specificity protein phosphatase domain profile. 52 196 IPR020422 GO:0006470(InterPro)
Cone8ag1552 196 FunFam probable tyrosine-protein phosphatase At1g05000 46 196 - -
Cone8ag1552 196 Gene3D Protein tyrosine phosphatase superfamily 46 196 IPR029021 -
Cone8ag1552 196 PANTHER TYROSINE-PROTEIN PHOSPHATASE 25 194 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1838 Cone-Chr5:12920068 Cone8ag1552 Cone-Chr8:11633645 2.83E-98 dispersed
Cone10ag1396 Cone-Chr10:10862174 Cone8ag1552 Cone-Chr8:11633645 1.32E-100 wgd
Cone12ag1505 Cone-Chr12:10695053 Cone8ag1552 Cone-Chr8:11633645 3.30E-136 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1552 K18045 - vvi:100251662 315.079