Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1553 ATGCCGGAAAATCGGCAAGTTCAGAAGAATGCCGCTCCAAATCAATCTGCTTCTGACATTGAAGAAACGTTTTGGCGGTTGAAAATTAATGATCATCCGGATGGGGAAGATGTAGGTCAATCAAATCTATATCCGGAGAGACCTGGTGAACCTGACTGCTTATTTTATTTGAGAACTGGCTTATGTGGCTATGGAAGTAACTGTCGTTACAATCACCCCACATATATCCCGCAGAGTGCTTGGTACAATGGAGAACTTCCAGAAAGAGCTGGAAAACCCGACTGTGAGTATTTTCTAAAGACTGGTACATGTAAATTTGGATCCTCCTGCAAATATCATCACCCGAGGGACAGGCATGGTGCTGGACCAGTCACATTCAACATCTTAGGTCTCCCTATACGTCAGGAAGAGAAACCATGCCCATATTATATGCGAACTGGATCATGTAAGTTTGGAGCTGCATGCAAGTTCCATCATCCCCAGCCTACATCACTTGGAACTTTGTTACCCCTAGCTGGATCTGCAGCCCTTGGATCTACAAGCTCAGTATCATCTGGTACACCTTATTTTAGTGGATCTTCCACCTGGTCGTTGCCAAGAATGCCCTATATAACTGGCCCACAAGTACAAGGTCAAGAGCCCTACATGCCTGTTCTTCTTTCTTTTTCACAAGGAATTATGCCCGCACAGGCCTGGAACACTTATATGGGAAACATAAGTCCTACAGCCTCTCCTACTGTTCTTGGGTCCAATCTTGTCTACAACTCCAGGTACCTGGGAGAGTTTAGTTCTAATGGGCAGTTACACATGTCCTCGACTTCAAATATCACCCTTCCCGAGAGGCCTGATCAACCAGAATGCCATTTTTTCATGAACACTGGGACCTGCAAATTTGGTTCTGGTTGCAAGTTCCACCACCCAAAAGACAAGATGGTGAAATCAGCTATAAACCCAATTGGGCTTCCCTCAAGATCTGGACAAGCTGTATGTTCAAACTACAGTATGTATGGCATTTGCAAGTTTGGCCCCTCTTGCAAATTTGATCACCCCTTTGCGGAACATCCTTATAACTACGGGTTTGGCTTACCTGCCCTATCGGTGTTGGACTCACCCCTCTCTAGCTATCCTAGAAACATTTCCAGAGCACCTTCTTCTGAGGCTTCTCCCAGTACATCATCTAAATCTCCTGAATGGGTTCAGAAGGTCAATGGTGAGAGCAATATTCATCAGAACTCCAATACACGAGTATCAGAAGACAACCCTGAACAGCAGCCTGGTTCTGTGTCATAA 1290 45.19 MPENRQVQKNAAPNQSASDIEETFWRLKINDHPDGEDVGQSNLYPERPGEPDCLFYLRTGLCGYGSNCRYNHPTYIPQSAWYNGELPERAGKPDCEYFLKTGTCKFGSSCKYHHPRDRHGAGPVTFNILGLPIRQEEKPCPYYMRTGSCKFGAACKFHHPQPTSLGTLLPLAGSAALGSTSSVSSGTPYFSGSSTWSLPRMPYITGPQVQGQEPYMPVLLSFSQGIMPAQAWNTYMGNISPTASPTVLGSNLVYNSRYLGEFSSNGQLHMSSTSNITLPERPDQPECHFFMNTGTCKFGSGCKFHHPKDKMVKSAINPIGLPSRSGQAVCSNYSMYGICKFGPSCKFDHPFAEHPYNYGFGLPALSVLDSPLSSYPRNISRAPSSEASPSTSSKSPEWVQKVNGESNIHQNSNTRVSEDNPEQQPGSVS 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11644733 11647597 + Conep08aG0160600.1 Cone8ag1553 444102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1553 429 ProSiteProfiles Zinc finger C3H1-type profile. 281 309 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872(InterPro)
Cone8ag1553 429 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 137 161 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 326 350 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 92 116 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 283 308 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 MobiDBLite consensus disorder prediction 376 429 - -
Cone8ag1553 429 Gene3D - 45 120 - -
Cone8ag1553 429 SMART c3hfinal6 324 351 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 SMART c3hfinal6 281 308 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 SMART c3hfinal6 90 116 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 SMART c3hfinal6 136 161 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 SMART c3hfinal6 47 74 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 ProSiteProfiles Zinc finger C3H1-type profile. 324 352 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 SUPERFAMILY CCCH zinc finger 52 73 IPR036855 GO:0046872(InterPro)
Cone8ag1553 429 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872(InterPro)
Cone8ag1553 429 Gene3D - 272 354 - -
Cone8ag1553 429 SUPERFAMILY CCCH zinc finger 283 310 IPR036855 GO:0046872(InterPro)
Cone8ag1553 429 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872(InterPro)
Cone8ag1553 429 SUPERFAMILY CCCH zinc finger 324 350 IPR036855 GO:0046872(InterPro)
Cone8ag1553 429 Gene3D - 121 172 - -
Cone8ag1553 429 PANTHER PROTEIN PHOSPHATASE RELATED 7 352 IPR050974 GO:0003729(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0933 Cone-Chr5:3992290 Cone8ag1553 Cone-Chr8:11644733 9.43E-27 dispersed
Cone8ag1553 Cone-Chr8:11644733 Cone8ag1611 Cone-Chr8:11924744 2.46E-08 dispersed
Cone10ag1398 Cone-Chr10:10881579 Cone8ag1553 Cone-Chr8:11644733 2.26E-123 wgd
Cone12ag1507 Cone-Chr12:10710518 Cone8ag1553 Cone-Chr8:11644733 8.26E-187 wgd
Cone3ag1462 Cone-Chr3:33273405 Cone8ag1553 Cone-Chr8:11644733 2.09E-88 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46754 PF07859 Abhydrolase_3 1.30E-46 CL0028 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1553 - - - 0.0