Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1554 ATGCGGCGAGGCAAGGCGGTCGCTGAATCGGAGACTGAAGCTAAAAAGAAACCGGTAAACGAGATCAGATTTCGCGGTGTCAGAAAACGTCCTTGGGGAAAGTACGCGGCCGAGATCAGAGATCCCTGGAAGAAGACCCGCGTTTGGCTAGGAACCTTCGACTCCGCCGAGGACGCAGCTCGAGCTTACGACGCCGCCGCTCGATCTCTCCGTGGTCCGAAGGCCAAAACTAACTTCCCTCTACATCATCATCCATCATCAATTCCTCCTCCTTTTCAACAACAAATCCCGTTCTATCAACCGCAGGATTTCCACACTTCTAATGGATTCTGCAACATTGATAGCGTTCTTGTTAATAGGCCAACTTCCAGCAGCTTGAGCTCCACCGTCGAGTCGTTCAGTGGTCCTAGAGTCTCGAATCCGGTGCCGTCCGTTCCGAGGATCCACCGGAAACCTGTAATGATGCCGATTACACCAGATGACTGCCACAGCGATTGCGATTCCTCATCGTCGGTTGTTGACGACGATGGCGGCTGTGTTCTGACGTCATCGTTAAGGAGAGTCTTGCCGTTCGATCTGAACCTACCGCCTCCTATGGACGATCTGGATTTATTCGGTGACGATCTTCAAGCTACTGCTTTGTGCTTCCGATGA 654 52.29 MRRGKAVAESETEAKKKPVNEIRFRGVRKRPWGKYAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARSLRGPKAKTNFPLHHHPSSIPPPFQQQIPFYQPQDFHTSNGFCNIDSVLVNRPTSSSLSSTVESFSGPRVSNPVPSVPRIHRKPVMMPITPDDCHSDCDSSSSVVDDDGGCVLTSSLRRVLPFDLNLPPPMDDLDLFGDDLQATALCFR 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11648898 11650178 + Conep08aG0160700.1 Cone8ag1554 444103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1554 217 MobiDBLite consensus disorder prediction 128 147 - -
Cone8ag1554 217 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 183 - -
Cone8ag1554 217 SMART rav1_2 23 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1554 217 SUPERFAMILY DNA-binding domain 24 81 IPR016177 GO:0003677(InterPro)
Cone8ag1554 217 FunFam Ethylene-responsive transcription factor 2 23 82 - -
Cone8ag1554 217 Gene3D AP2/ERF domain 22 82 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1554 217 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1554 217 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1554 217 Pfam AP2 domain 23 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1554 217 CDD AP2 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone8ag1554 217 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1170 Cone-Chr14:9624721 Cone8ag1554 Cone-Chr8:11648898 8.38E-63 dispersed
Cone15ag1186 Cone-Chr15:9539276 Cone8ag1554 Cone-Chr8:11648898 4.23E-60 dispersed
Cone1ag0177 Cone-Chr1:1000884 Cone8ag1554 Cone-Chr8:11648898 4.04E-29 dispersed
Cone6ag0166 Cone-Chr6:810460 Cone8ag1554 Cone-Chr8:11648898 3.17E-33 dispersed
Cone8ag1554 Cone-Chr8:11648898 Cone9ag0191 Cone-Chr9:828398 3.31E-32 dispersed
Cone10ag1399 Cone-Chr10:10886244 Cone8ag1554 Cone-Chr8:11648898 5.14E-97 wgd
Cone12ag1508 Cone-Chr12:10715136 Cone8ag1554 Cone-Chr8:11648898 1.58E-152 wgd
Cone3ag1463 Cone-Chr3:33278845 Cone8ag1554 Cone-Chr8:11648898 2.55E-97 wgd
Cone6ag0997 Cone-Chr6:5491872 Cone8ag1554 Cone-Chr8:11648898 3.01E-30 wgd
Cone8ag1554 Cone-Chr8:11648898 Cone9ag0999 Cone-Chr9:5159303 1.07E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46755 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1554 K09286 - csv:101221703 203.371