Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1559 ATGAGGAAGAGGGAGAGAGAGAACCCTTGTGGGGTTTGTGGCCATTATCACAAATTCGAGGAGGGAGAGGTTTGTGGGATATGTGGTCACCGTGTTCCAGCTTCGTCGGAGAAAACGACGATTCAAGTCAGCGCTTTCCCGTCGGAGATTTTGCCGAAATTTCTGTATCTGGGTAGCTATGATAACGCTTCACGGTCGGAGCTTCTCAAGACTCAGGGTATCTCCCGCGTTCTGAATACTGTTCCTGCCTGTCAGAATCTGTACAAAAACTCATTTACTTATCACTGTCTTCAATATGACAAAATCTTACCCTTTGATGACGCAATTGAATTTTTAGAACAATGTGAAAGGGACAAGGCTCGTGTTTTGGTACACTGTATGTCAGGAAAAAACAGGTCTCCAGCTATTGTAATAGCTTACTTGATGAAGTGTAAAGGATGGAGACTGGCTCAGAGCTATCAGTGGCTCAAAGATCGTAGACCATCTGTTGATTTAACTGAAGGTGTTTATCAACAATTGCAAGAATACGAGCAGAAGATTTTCAGATCATCTGACAATAGCATCAACCCGATCTTACTCCCTCCTACTGGTCCCTCTTTTAGCTTTGGCTTTCCAAAAACAATCGATCCGATTCCTAGCCCTGCTTTCAGCAATATTGGTACTACGTCTGCCTTTTCTCGGTCTACCTTAGCGATACCTCCTAATGAGTTCACATTTGGAGCGGCCAGACAGGCCCGGAATAACTTCTCGGCCAGCCCTTTTGGGGTCAATCCGCCAAATCCAGATGGCAATGATATTCAAATGGATAGTTCTTAA 816 44.49 MRKRERENPCGVCGHYHKFEEGEVCGICGHRVPASSEKTTIQVSAFPSEILPKFLYLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYHCLQYDKILPFDDAIEFLEQCERDKARVLVHCMSGKNRSPAIVIAYLMKCKGWRLAQSYQWLKDRRPSVDLTEGVYQQLQEYEQKIFRSSDNSINPILLPPTGPSFSFGFPKTIDPIPSPAFSNIGTTSAFSRSTLAIPPNEFTFGAARQARNNFSASPFGVNPPNPDGNDIQMDSS 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11668557 11671093 - Conep08aG0161200.1 Cone8ag1559 444108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1559 271 Gene3D Protein tyrosine phosphatase superfamily 40 188 IPR029021 -
Cone8ag1559 271 Pfam Dual specificity phosphatase, catalytic domain 55 179 IPR000340 GO:0016311(InterPro)
Cone8ag1559 271 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311(InterPro)
Cone8ag1559 271 MobiDBLite consensus disorder prediction 249 271 - -
Cone8ag1559 271 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 184 IPR029021 -
Cone8ag1559 271 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 271 IPR044212 GO:0005634(PANTHER)|GO:0009734(InterPro)|GO:0009738(InterPro)|GO:0033549(PANTHER)|GO:0033549(InterPro)|GO:0043407(InterPro)
Cone8ag1559 271 SMART dsp_5 46 179 IPR020422 GO:0006470(InterPro)
Cone8ag1559 271 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 171 IPR000387 GO:0016311(InterPro)
Cone8ag1559 271 FunFam Protein-tyrosine-phosphatase IBR5 36 186 - -
Cone8ag1559 271 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 182 IPR020422 GO:0006470(InterPro)
Cone8ag1559 271 CDD DSP_plant_IBR5-like 47 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag1514 Cone-Chr12:10732540 Cone8ag1559 Cone-Chr8:11668557 1.13E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1559 K04459 - csv:101211000 438.343