Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1603 ATGTCTTTGCCAGTGTTAAAGAAGGCGAACCAATCAAGTGCAACTAACCCAAAGGAAATTTCTGAAAAAGTGAAAGAAAGAGCTGATCCTGTTAGTTGTAGAGTGGGAAAGAAACCAGTACCACAAGCAGTCAATTCTAGAAGCCATCTCGGGAGGAATCGCACAAGTGATGGTTTCATTATGACGGGTCAAGCTAAGGTGGATGCTCGTGCATTGTCAAGAAAGTCTGTCAAGCGAATTGTGAAGACCACAGTAAAGGCATTCGACTGTAAAAGGACTTTGAGATCCAAGTTTGCATCTGGCATAATCAAACCAGTAACTGCTTCTGTGTCATCATCTAGGAATGATGAAGAAGTGGCATCCTCTCTTCCTGATAGCGTTGCTCATGAACCTGATCGACAAGAGGTTCCATCTGATAGAAACCAAAACCCAAGTACAAATACAATTATTAAGTTTAGAAGAAGATCTTATACATCAACATTAATGGCAGGGTCAAAGGTTGGGCTGTACTGTATGCTACTCCCACATTTTTCTGTTAGAGTATTCTCTTACAATTCTATTACTTTTCAGTTACTTGAGGAAAAACTACCAAGTATTGATGATCAGCTCAATCAACTGGAAGTTGCTGAATATGTTGATGATATTTACCAATATTATTGGGTTACAGAGTCACAGACTCCACCTTTGGCAGATTACATGTCGAAGCAGACACACATTTCCCCTCAGATGCGGGGCATACTGATCAACTGGTTAATTGAAGTACACTTAAAATTTGACTTGATGCATGAAACCCTATATCTCACAGTGGCATTGTTTGACTGGTATGTTTCGCAAGTAATTGTTAAGAAAGACGAGATGCAGTTGGTTGGTCTTACAGCACTGCTACTGGCATCAAAATATGAAGATTTTTGGCATCCCAGAGTTGAAGATTTGATTAGCATCTCAGCTAAACCATACACAAGAGATCAAATGCTGGAAATGGAAGTGATGATTCTGAAAAAGTTGAAATTTCGTCTGAATATACCCACTCTCTATGTCTTCATGTTAAGGTTCCTCAAAGCTGCTCAGTCCAATACAAAGCTTGAACACCTGTCATTTTACCTAATTGAGCTATGTTTAGTCGAGTATGAAGCTTTAAGGTTCAGGCCCTCATTGATATGTGCGTCAGCAATCTATGTTGCAAGGTGTACCCTGCAAATGACTCCATGTTGGAGTCCACTGCTTGGCAAACATACACGATATGAGGTGTCTCATATGAGGGAATGTGCGGAGATGATTTTAAAATTCCAAAAATATGGTGCAGGACAGTTGAGAGTAGCATATGACAAGTACATTGAAGCTGACTTTCTTGGTGTTGCAGCAGTGAAGCCTGTGGATAGGCTTCCTCTCTGA 1392 40.37 MSLPVLKKANQSSATNPKEISEKVKERADPVSCRVGKKPVPQAVNSRSHLGRNRTSDGFIMTGQAKVDARALSRKSVKRIVKTTVKAFDCKRTLRSKFASGIIKPVTASVSSSRNDEEVASSLPDSVAHEPDRQEVPSDRNQNPSTNTIIKFRRRSYTSTLMAGSKVGLYCMLLPHFSVRVFSYNSITFQLLEEKLPSIDDQLNQLEVAEYVDDIYQYYWVTESQTPPLADYMSKQTHISPQMRGILINWLIEVHLKFDLMHETLYLTVALFDWYVSQVIVKKDEMQLVGLTALLLASKYEDFWHPRVEDLISISAKPYTRDQMLEMEVMILKKLKFRLNIPTLYVFMLRFLKAAQSNTKLEHLSFYLIELCLVEYEALRFRPSLICASAIYVARCTLQMTPCWSPLLGKHTRYEVSHMRECAEMILKFQKYGAGQLRVAYDKYIEADFLGVAAVKPVDRLPL 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11871861 11874622 - Conep08aG0165800.1 Cone8ag1603 444152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1603 463 Gene3D - 334 462 - -
Cone8ag1603 463 SUPERFAMILY Cyclin-like 205 340 IPR036915 -
Cone8ag1603 463 MobiDBLite consensus disorder prediction 19 33 - -
Cone8ag1603 463 MobiDBLite consensus disorder prediction 110 147 - -
Cone8ag1603 463 FunFam putative cyclin-B3-1 isoform X3 338 462 - -
Cone8ag1603 463 CDD CYCLIN_CCNB1-like_rpt1 208 337 - -
Cone8ag1603 463 PANTHER CYCLINS 198 430 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cone8ag1603 463 SMART cyclin_7 346 428 IPR013763 -
Cone8ag1603 463 SMART cyclin_7 249 333 IPR013763 -
Cone8ag1603 463 MobiDBLite consensus disorder prediction 1 56 - -
Cone8ag1603 463 PIRSF Cyclin_A_B_D_E 4 461 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cone8ag1603 463 SUPERFAMILY Cyclin-like 341 459 IPR036915 -
Cone8ag1603 463 FunFam Cyclin N-terminal domain containing 2 229 337 - -
Cone8ag1603 463 Gene3D - 229 333 - -
Cone8ag1603 463 MobiDBLite consensus disorder prediction 1 18 - -
Cone8ag1603 463 SMART Cyclin_C_2 342 458 IPR004367 -
Cone8ag1603 463 Pfam Cyclin, N-terminal domain 214 340 IPR006671 -
Cone8ag1603 463 Pfam Cyclin, C-terminal domain 342 456 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1603 Cone-Chr8:11871861 Cone9ag1624 Cone-Chr9:11579755 6.16E-50 dispersed
Cone8ag1603 Cone-Chr8:11871861 Cone17ag1451 Cone-Chr17:9849759 7.76E-74 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1603 K21777 - mdm:103445884 507.679