Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1604 ATGACTTGCAGTATTCATTCTTGCTCCCGCAAGCACATGTTAAATACAATAAAAACACTCGCCCTTGTTATTGTTCTCATCCAATATACACAAATAGTGGCCTCCGGCGAGTGTACCCCGGAGCCCGATGAGCTCACAGGTAATGACGATGAGAAGAGGGAAGCGCTCAGATACAAGGCGGGGTCAATTGGATCCATCCTAATAGCGGGTGCGGTGGGGGTGAGCCTTCCCCTGCTGGGCAACAAGGTCCCTGCTCTAAGCCCAGAAAATGACATGTTCTTCATGATAAAGGCTTTTGCAGCGGGGGTCATCCTCTCAACTGCATTTGTACACATACTACCCGATGCATTTGACAAGTTGAGCTCGCCCTGCCTAAGTGCTAACCCTTGGGGGGATTTCCCTTTTGCAGGGTTTGTGGCCATGCTCTCCTCCATCGCTACCTTGATGATGGACACCATTGCTACAGGATTTTATAAGAGGCAGCACTATGCTACTAGTAGTAGTGCTAGTACTGCTACTGATCATCGTCGTAACAATAAGTCCAAGACTAGGCAGCAGGTAATTCGAGTGGATATCGAAGAATTAGGCGGAGCCCATCAAGATGATGAGCACCCAGGTCATGTGCATGTGCATACACATACCACGCATGGCCATGCCCATGGATCTGCAGCCGATCTCACTCTGCCGGAGCTCATCCGCCATCGCATTATATCCCAAGTACTGGAGTTAGGAATAGTAGTGCATTCAGTAATAATAGGAATATCATTGGGTGCCTCAGAGAGCCTAGGGACAATAAAGCCACTCATGGTAGCCCTCTCCTTCCACCAGTTCTTTGAGGGTATGGGACTTGGGGGCTGCATCTGTCAGGCGCAATTCAAGTCCCGGTCGGCGGCAATGATGGCAACCTTCTTCTCCCTGACAACCCCTCTGGGAATCGCAGTTGGGATAGGGATATGCAACGTCTACACAGACAACAGCCCAACCGCAATAGTAGTAGAAGGGATATTGAATTCAGCTTCGGCGGGGATATTGATCTACATGGCCCTTGTTGACCTTCTAGCCGCCGATTTCATGAACCCGAGGATGCAGACCAATCTCAGGCTTCAGATTGGATCTAATGTTTCTCTTCTTTTGGGGGCTGCCTGCATGTCTCTCCTAGCCAAATGGGCTTGA 1173 49.87 MTCSIHSCSRKHMLNTIKTLALVIVLIQYTQIVASGECTPEPDELTGNDDEKREALRYKAGSIGSILIAGAVGVSLPLLGNKVPALSPENDMFFMIKAFAAGVILSTAFVHILPDAFDKLSSPCLSANPWGDFPFAGFVAMLSSIATLMMDTIATGFYKRQHYATSSSASTATDHRRNNKSKTRQQVIRVDIEELGGAHQDDEHPGHVHVHTHTTHGHAHGSAADLTLPELIRHRIISQVLELGIVVHSVIIGISLGASESLGTIKPLMVALSFHQFFEGMGLGGCICQAQFKSRSAAMMATFFSLTTPLGIAVGIGICNVYTDNSPTAIVVEGILNSASAGILIYMALVDLLAADFMNPRMQTNLRLQIGSNVSLLLGAACMSLLAKWA 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11878688 11880062 + Conep08aG0166000.1 Cone8ag1604 444153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1604 390 NCBIfam ZIP zinc/iron transport family 49 390 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
Cone8ag1604 390 PANTHER ZINC/IRON TRANSPORTER 52 389 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Cone8ag1604 390 Pfam ZIP Zinc transporter 57 387 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0926 Cone-Chr17:7271060 Cone8ag1604 Cone-Chr8:11878688 4.92E-78 dispersed
Cone20ag0270 Cone-Chr20:1203835 Cone8ag1604 Cone-Chr8:11878688 6.21E-86 dispersed
Cone7ag1290 Cone-Chr7:9516202 Cone8ag1604 Cone-Chr8:11878688 5.63E-88 dispersed
Cone8ag1604 Cone-Chr8:11878688 Cone9ag0247 Cone-Chr9:1053571 9.48E-117 dispersed
Cone8ag1604 Cone-Chr8:11878688 Cone9ag0269 Cone-Chr9:1146817 9.63E-132 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1604 K14709 - cit:102615205 441.039