Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1607 ATGTTCCATCCCAAGAAGCCTTCAACTATGAATTCCCATGAGAGACCCAACATGCACTGCGTCCAACATGCTGACTCTGGCCTTGTCCTCACCACTGACCCCAAACCCCGCCTCCGCTGGACGGTTGAGCTCCACGAGCGCTTTGTCGACGCTGTCAGTCAGCTTGGAGGCCCCGATAAAGCCACCCCAAAGACCATCATGAGGGTTATGGGTGTGAAGGGTCTTACTCTTTACCATCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAACCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTTCGGCTTTAGAACTTCAACGAAACAGTGCGCCTTCTTCCAGCATAATGGGTCGCAGTATGAATGATAACTCACACATGGTTGATGCAATCAGGATGCAAATGGAAGTGCAGCGAAGACTGCATGAACAATTAGAGGTGCAGAGACACCTTCAGTTGAGGATAGAAGCCCAAGGAAAATACATGCAAAGTATATTGGAGAGGACTTGCAAAACGCTTGCAGGTGAGAATATGGCCTCCGGATCTCATAAAAGCATTCATGGATTCACTCATTATAATCATCATCATCATCAAGCTGGTGTTCCCCTTGACATGGAACCGGCCATCAAAGATTTTGGTTCCCCTCTCAATTTTCCATCCTTCCAAGACCTTAGCATATATGGACCGGATCACGGCCAACTTGATCTTCAAGTACACAACAGCAATATGGATAGATCACCTAACGCCGCAAATCTGGATAGTTTTTTGCCTATTAATGATACAATTAACATGCGCACGGGAAAGAAGAGAATAAGCCCTAACTACAATAGAAGTGGGAAGAACATCTCCTTCTTGGACTGGCCGGATGATTTAGCACGGGGCCAAGATATACTATCGTCAGGCACTTCATCATCGTGCGATAATTCGGACCCGTTCAAAGGCGGCGACCATGTTCGTGATATGGATCAGATTCAGAGAGGTAGCGGAACTAGTACAAGTAATTTAGACAGCATCATGGTAATGACTTCAGACATGTGCGAAACAAAGCCTACTAGCACTCTTAGTCTAATCGGATAA 1089 45.73 MFHPKKPSTMNSHERPNMHCVQHADSGLVLTTDPKPRLRWTVELHERFVDAVSQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGSALELQRNSAPSSSIMGRSMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERTCKTLAGENMASGSHKSIHGFTHYNHHHHQAGVPLDMEPAIKDFGSPLNFPSFQDLSIYGPDHGQLDLQVHNSNMDRSPNAANLDSFLPINDTINMRTGKKRISPNYNRSGKNISFLDWPDDLARGQDILSSGTSSSCDNSDPFKGGDHVRDMDQIQRGSGTSTSNLDSIMVMTSDMCETKPTSTLSLIG 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11908305 11910197 + Conep08aG0166300.1 Cone8ag1607 444156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1607 362 Gene3D - 34 92 - -
Cone8ag1607 362 Pfam MYB-CC type transfactor, LHEQLE motif 131 176 IPR025756 -
Cone8ag1607 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677(InterPro)
Cone8ag1607 362 Pfam Myb-like DNA-binding domain 37 87 IPR001005 -
Cone8ag1607 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Cone8ag1607 362 MobiDBLite consensus disorder prediction 300 339 - -
Cone8ag1607 362 MobiDBLite consensus disorder prediction 300 314 - -
Cone8ag1607 362 FunFam Myb family transcription factor 34 92 - -
Cone8ag1607 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 14 228 IPR046955 GO:0003700(InterPro)
Cone8ag1607 362 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1607 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0518 Cone-Chr12:3547407 Cone8ag1607 Cone-Chr8:11908305 1.42E-36 dispersed
Cone4ag0401 Cone-Chr4:1822889 Cone8ag1607 Cone-Chr8:11908305 9.42E-53 dispersed
Cone7ag0390 Cone-Chr7:1718930 Cone8ag1607 Cone-Chr8:11908305 1.29E-48 dispersed
Cone8ag0716 Cone-Chr8:7215291 Cone8ag1607 Cone-Chr8:11908305 3.33E-08 dispersed
Cone8ag1607 Cone-Chr8:11908305 Cone9ag0583 Cone-Chr9:2748275 1.04E-31 dispersed
Cone10ag1448 Cone-Chr10:11222271 Cone8ag1607 Cone-Chr8:11908305 8.66E-83 wgd
Cone3ag1514 Cone-Chr3:33669386 Cone8ag1607 Cone-Chr8:11908305 1.52E-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone4ag0401 . 1 288 G2-like Transcription Factor Family AT3G24120 62.5 3.7e-82 302.4
Cone7ag0390 . 1 288 G2-like Transcription Factor Family AT3G24120 61.5 1.2e-80 297.4
Cone8ag1607 . 25 175 G2-like Transcription Factor Family AT3G24120 62.0 1.2e-40 164.5
Cone3ag1514 . 32 173 G2-like Transcription Factor Family AT3G24120 62.0 4.6e-40 162.5
Cone10ag1448 . 32 173 G2-like Transcription Factor Family AT3G24120 61.4 1.0e-39 161.4
Cone18ag1238 . 270 476 G2-like Transcription Factor Family AT5G16560 57.8 1.4e-47 188.0
Cone12ag0486 . 157 360 G2-like Transcription Factor Family AT5G16560 50.7 2.9e-37 153.7
Cone7ag1407 . 4 183 G2-like Transcription Factor Family AT5G42630 57.0 6.7e-44 174.9
Cone4ag1544 . 2 177 G2-like Transcription Factor Family AT5G42630 58.8 3.4e-40 162.5
Cone20ag0163 . 112 263 G2-like Transcription Factor Family AT5G42630 60.5 7.9e-37 151.4
Cone1ag0620 . 1 325 G2-like Transcription Factor Family AT5G59570 50.3 8.6e-63 238.0
Cone19ag0853 . 1 273 G2-like Transcription Factor Family AT1G25550 58.2 6.1e-63 238.4
Cone13ag0852 . 20 275 G2-like Transcription Factor Family AT1G25550 57.7 2.3e-62 236.5
Cone9ag0476 . 12 255 G2-like Transcription Factor Family AT1G25550 56.9 4.1e-59 225.7
Cone6ag0464 . 12 255 G2-like Transcription Factor Family AT1G25550 56.6 7.0e-59 224.9
Cone13ag0852 . 20 315 G2-like Transcription Factor Family AT1G68670 51.3 1.8e-67 253.8
Cone19ag0853 . 19 306 G2-like Transcription Factor Family AT1G68670 53.3 5.2e-67 252.3
Cone6ag0464 . 12 292 G2-like Transcription Factor Family AT1G68670 52.1 3.5e-63 239.6
Cone5ag1126 . 1 263 G2-like Transcription Factor Family AT3G46640 54.6 1.0e-64 244.6
Cone1ag0620 . 1 285 G2-like Transcription Factor Family AT3G46640 52.1 1.4e-63 240.7
Cone10ag0471 . 1 333 G2-like Transcription Factor Family AT5G05090 51.9 4.8e-73 271.9
Cone3ag0500 . 1 332 G2-like Transcription Factor Family AT5G05090 51.5 3.4e-71 265.8
Cone4ag0401 . 1 291 G2-like Transcription Factor Family AT4G13640 58.7 2.5e-62 236.5
Cone7ag0390 . 1 291 G2-like Transcription Factor Family AT4G13640 58.5 1.4e-60 230.7
Cone10ag0633 . 88 350 G2-like Transcription Factor Family AT3G04450 54.4 6.8e-55 212.2
Cone17ag0682 . 83 296 G2-like Transcription Factor Family AT3G04450 55.5 8.4e-45 178.7
Cone4ag0401 . 1 288 G2-like Transcription Factor Family AT3G24120 62.5 3.7e-82 302.4
Cone7ag0390 . 1 288 G2-like Transcription Factor Family AT3G24120 61.5 1.2e-80 297.4
Cone8ag1607 . 25 175 G2-like Transcription Factor Family AT3G24120 62.0 1.2e-40 164.5
Cone3ag1514 . 32 173 G2-like Transcription Factor Family AT3G24120 62.0 4.6e-40 162.5
Cone10ag1448 . 32 173 G2-like Transcription Factor Family AT3G24120 61.4 1.0e-39 161.4
Cone6ag0578 . 5 267 G2-like Transcription Factor Family AT1G69580 53.5 3.8e-51 199.5
Cone9ag0583 . 5 257 G2-like Transcription Factor Family AT1G69580 52.0 3.6e-49 193.0
Cone10ag0559 . 54 247 G2-like Transcription Factor Family AT1G69580 55.6 4.1e-37 152.9
Cone8ag1607 . 1 301 G2-like Transcription Factor Family AT1G79430 57.0 5.1e-70 262.3
Cone3ag1514 . 1 322 G2-like Transcription Factor Family AT1G79430 51.6 2.8e-68 256.5
Cone10ag1448 . 1 326 G2-like Transcription Factor Family AT1G79430 51.5 3.1e-67 253.1
Cone4ag0401 . 34 197 G2-like Transcription Factor Family AT1G79430 62.2 1.5e-40 164.5
Cone7ag0390 . 19 225 G2-like Transcription Factor Family AT1G79430 52.6 2.1e-39 160.6
Cone1ag0088 . 80 297 G2-like Transcription Factor Family AT2G01060 70.2 2.1e-59 226.5
Cone5ag1779 . 80 301 G2-like Transcription Factor Family AT2G01060 68.9 7.8e-59 224.6
Cone10ag0471 . 1 333 G2-like Transcription Factor Family AT3G10760 60.9 5.3e-93 338.6
Cone3ag0500 . 1 332 G2-like Transcription Factor Family AT3G10760 59.4 9.9e-92 334.3
Cone10ag0471 . 1 220 G2-like Transcription Factor Family AT2G40970 59.9 3.0e-61 232.6
Cone3ag0500 . 1 218 G2-like Transcription Factor Family AT2G40970 60.0 1.5e-60 230.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46758 PF00454 PI3_PI4_kinase 4.40E-18 CL0016 Cone TF