Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1607 ATGTTCCATCCCAAGAAGCCTTCAACTATGAATTCCCATGAGAGACCCAACATGCACTGCGTCCAACATGCTGACTCTGGCCTTGTCCTCACCACTGACCCCAAACCCCGCCTCCGCTGGACGGTTGAGCTCCACGAGCGCTTTGTCGACGCTGTCAGTCAGCTTGGAGGCCCCGATAAAGCCACCCCAAAGACCATCATGAGGGTTATGGGTGTGAAGGGTCTTACTCTTTACCATCTCAAGAGCCATCTTCAGAAATTTAGGCTTGGAAAGCAACCTCACAAGGAATTCAATGATCATTCAATTAAGGATGGTTCGGCTTTAGAACTTCAACGAAACAGTGCGCCTTCTTCCAGCATAATGGGTCGCAGTATGAATGATAACTCACACATGGTTGATGCAATCAGGATGCAAATGGAAGTGCAGCGAAGACTGCATGAACAATTAGAGGTGCAGAGACACCTTCAGTTGAGGATAGAAGCCCAAGGAAAATACATGCAAAGTATATTGGAGAGGACTTGCAAAACGCTTGCAGGTGAGAATATGGCCTCCGGATCTCATAAAAGCATTCATGGATTCACTCATTATAATCATCATCATCATCAAGCTGGTGTTCCCCTTGACATGGAACCGGCCATCAAAGATTTTGGTTCCCCTCTCAATTTTCCATCCTTCCAAGACCTTAGCATATATGGACCGGATCACGGCCAACTTGATCTTCAAGTACACAACAGCAATATGGATAGATCACCTAACGCCGCAAATCTGGATAGTTTTTTGCCTATTAATGATACAATTAACATGCGCACGGGAAAGAAGAGAATAAGCCCTAACTACAATAGAAGTGGGAAGAACATCTCCTTCTTGGACTGGCCGGATGATTTAGCACGGGGCCAAGATATACTATCGTCAGGCACTTCATCATCGTGCGATAATTCGGACCCGTTCAAAGGCGGCGACCATGTTCGTGATATGGATCAGATTCAGAGAGGTAGCGGAACTAGTACAAGTAATTTAGACAGCATCATGGTAATGACTTCAGACATGTGCGAAACAAAGCCTACTAGCACTCTTAGTCTAATCGGATAA 1089 45.73 MFHPKKPSTMNSHERPNMHCVQHADSGLVLTTDPKPRLRWTVELHERFVDAVSQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGSALELQRNSAPSSSIMGRSMNDNSHMVDAIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILERTCKTLAGENMASGSHKSIHGFTHYNHHHHQAGVPLDMEPAIKDFGSPLNFPSFQDLSIYGPDHGQLDLQVHNSNMDRSPNAANLDSFLPINDTINMRTGKKRISPNYNRSGKNISFLDWPDDLARGQDILSSGTSSSCDNSDPFKGGDHVRDMDQIQRGSGTSTSNLDSIMVMTSDMCETKPTSTLSLIG 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11908305 11910197 + Conep08aG0166300.1 Cone8ag1607 444156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1607 362 Gene3D - 34 92 - -
Cone8ag1607 362 Pfam MYB-CC type transfactor, LHEQLE motif 131 176 IPR025756 -
Cone8ag1607 362 NCBIfam myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677(InterPro)
Cone8ag1607 362 Pfam Myb-like DNA-binding domain 37 87 IPR001005 -
Cone8ag1607 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
Cone8ag1607 362 MobiDBLite consensus disorder prediction 300 339 - -
Cone8ag1607 362 MobiDBLite consensus disorder prediction 300 314 - -
Cone8ag1607 362 FunFam Myb family transcription factor 34 92 - -
Cone8ag1607 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 14 228 IPR046955 GO:0003700(InterPro)
Cone8ag1607 362 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0518 Cone-Chr12:3547407 Cone8ag1607 Cone-Chr8:11908305 1.42E-36 dispersed
Cone4ag0401 Cone-Chr4:1822889 Cone8ag1607 Cone-Chr8:11908305 9.42E-53 dispersed
Cone7ag0390 Cone-Chr7:1718930 Cone8ag1607 Cone-Chr8:11908305 1.29E-48 dispersed
Cone8ag0716 Cone-Chr8:7215291 Cone8ag1607 Cone-Chr8:11908305 3.33E-08 dispersed
Cone8ag1607 Cone-Chr8:11908305 Cone9ag0583 Cone-Chr9:2748275 1.04E-31 dispersed
Cone10ag1448 Cone-Chr10:11222271 Cone8ag1607 Cone-Chr8:11908305 8.66E-83 wgd
Cone3ag1514 Cone-Chr3:33669386 Cone8ag1607 Cone-Chr8:11908305 1.52E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46758 PF00454 PI3_PI4_kinase 4.40E-18 CL0016 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1607 - - - 0.0