Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone8ag1613 ATGTATGGATATAAATATGATAACTATAGGCTTTACTTTCATCAGCTAGCTGATATGCTTGGATTGAATCAACTGTTCCAGATGAACCTTAAGGCATCAGAATTACTAGCATCTGCGGAACCTAAAAAGACTAATGCGAGTCCTCTGGGATGCGATCAGCTGCAAACAAGGTCGACAGGGGGAGCAGTGGCAATATCACGAGCATCATCCAGTCCCAAGATTAATAAGAATATTATACCATCTCAAGTCCCAAACTATGGCCAATGGAGTGGAAACGGTTCTCGCTGTGACAGCTTAGAGAGCTCTAGTGTGCCCCTCAGGCCTCACACTGGTGGTGACGTACGATGGGATGCGTTCAACATGGTTTCCAGAGGATCCCCGCTTAATCTGAGCCATTTCCGGCTGCTCAAGCGAATCGGGTACGGGGACATAGGGAGCGTCTATCTGGTAGAACTAAGAGGGACTGATGCCTATTTTGCTATGAAAGTGATGGACAAAGCCTCCCTCGCAAATCGAAACAAGCTACTGAGAGCACAGACGGAGAGGGAGATACTTGGCCTTCTAGACCATCCATTCTTGCCCACACTCTACTCCTACTTCGATACTGACAAGTTCTATTGCTTGGTCATGGAGTTCTGCAGCGGAGGGAATCTCCATGCGCTGCGTCAGAAGCAACCCAACAAGTATTTTAACGAGGAAGCAGCAAGGTTCTATGTATCCGAAGTCTTGCTGGCGCTTGAGTACCTGCACATGCTAGGCATTGTGTACAGAGACTTAAAGCCTGAAAACGTGCTGGTGCGAGACGAAGGTCACATCATGCTCTCGGATTTTGATCTCTCACTGCGCTGCTCTGTGAACCCCATGCTAGTGAAGCCGTCCTCGGTTCATCATGTAAGTAACGGCAGTGGCGTGGGCGGGAGCTTTAATCATTCTAGTCATGACCCGGGGGCCATTCTAGATGATGAATTTGCAGTGCACGGCTGCATGCAGCCGGCCTCAAACTTTATTCCTCGAATTCTTCCTTCAAAGAAGAACCGCAAATCTAAATCCGATTTCGGGCTCTTTGTGGGAGGGTCCCTCCCAGAACTGATGGCGGAGCCCACAAACGTGCGATCCATGTCATTTGTGGGTACCCATGAGTACTTAGCCCCGGAGATCATCCGAGGAGAGGGTCATGGAAGCGCCGTGGACTGGTGGACGTTTGGGATCTTATTGTACGAGCTACTGCACGGGACAACTCCCTTCAAGGGTTCCGGGAATCGAGCCACCCTGTTCAACGTTGTAGGACAGCCTTTGAGATTCCCAGAAAATCCTCAGGTGAGTTTTATGGCGCGGGATCTAATACGTGGGCTTCTCGTGAAGGAGCCTCAGAAGCGAATTGCGTACAAAAGGGGCGCCACCGAAATAAAACAACACCCTTTCTTCGAGGGCGTCAACTGGGCCCTGGTCAGAAGCGCCATGCCTCCTCACATACCTGAGCCCGTTGACTTCTCACAATTTGCAGCCAAAGAGGCAGCCCCTGCAGACAAGAAGATGGCTGATGTTGTGGCCGATACCAACACTACTAGTACTTCTAGTAATGATTCTTCTTTCATAGATTTTGAGTACTTCTAG 1614 49.63 MYGYKYDNYRLYFHQLADMLGLNQLFQMNLKASELLASAEPKKTNASPLGCDQLQTRSTGGAVAISRASSSPKINKNIIPSQVPNYGQWSGNGSRCDSLESSSVPLRPHTGGDVRWDAFNMVSRGSPLNLSHFRLLKRIGYGDIGSVYLVELRGTDAYFAMKVMDKASLANRNKLLRAQTEREILGLLDHPFLPTLYSYFDTDKFYCLVMEFCSGGNLHALRQKQPNKYFNEEAARFYVSEVLLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVNPMLVKPSSVHHVSNGSGVGGSFNHSSHDPGAILDDEFAVHGCMQPASNFIPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGILLYELLHGTTPFKGSGNRATLFNVVGQPLRFPENPQVSFMARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSAMPPHIPEPVDFSQFAAKEAAPADKKMADVVADTNTTSTSSNDSSFIDFEYF 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 11935714 11937327 - Conep08aG0166900.1 Cone8ag1613 444162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone8ag1613 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone8ag1613 537 ProSiteProfiles Protein kinase domain profile. 133 475 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1613 537 FunFam Serine/threonine-protein kinase AGC1-5 131 216 - -
Cone8ag1613 537 SUPERFAMILY Protein kinase-like (PK-like) 130 505 IPR011009 -
Cone8ag1613 537 SMART serkin_6 133 475 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1613 537 Gene3D Phosphorylase Kinase; domain 1 132 216 - -
Cone8ag1613 537 CDD STKc_phototropin_like 131 496 - -
Cone8ag1613 537 FunFam serine/threonine-protein kinase D6PK-like 217 284 - -
Cone8ag1613 537 Gene3D Transferase(Phosphotransferase) domain 1 368 493 - -
Cone8ag1613 537 Gene3D Transferase(Phosphotransferase) domain 1 217 282 - -
Cone8ag1613 537 ProSiteProfiles AGC-kinase C-terminal domain profile. 476 537 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1613 537 FunFam Serine/threonine-protein kinase AGC1-7 368 493 - -
Cone8ag1613 537 PANTHER FLIPPASE KINASE 1-RELATED 88 510 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
Cone8ag1613 537 Pfam Protein kinase domain 134 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone8ag1613 537 Pfam Protein kinase domain 369 475 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0068 Cone-Chr1:340368 Cone8ag1613 Cone-Chr8:11935714 1.00E-183 dispersed
Cone5ag1793 Cone-Chr5:12725115 Cone8ag1613 Cone-Chr8:11935714 8.15E-184 dispersed
Cone8ag1349 Cone-Chr8:10827919 Cone8ag1613 Cone-Chr8:11935714 4.01E-106 dispersed
Cone8ag1613 Cone-Chr8:11935714 Cone9ag1115 Cone-Chr9:7183955 2.55E-112 dispersed
Cone12ag1543 Cone-Chr12:10981674 Cone8ag1613 Cone-Chr8:11935714 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83150 PF03181 BURP 1.40E-72 No_clan Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone8ag1613 - - - 0.0