Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone8ag1613 | ATGTATGGATATAAATATGATAACTATAGGCTTTACTTTCATCAGCTAGCTGATATGCTTGGATTGAATCAACTGTTCCAGATGAACCTTAAGGCATCAGAATTACTAGCATCTGCGGAACCTAAAAAGACTAATGCGAGTCCTCTGGGATGCGATCAGCTGCAAACAAGGTCGACAGGGGGAGCAGTGGCAATATCACGAGCATCATCCAGTCCCAAGATTAATAAGAATATTATACCATCTCAAGTCCCAAACTATGGCCAATGGAGTGGAAACGGTTCTCGCTGTGACAGCTTAGAGAGCTCTAGTGTGCCCCTCAGGCCTCACACTGGTGGTGACGTACGATGGGATGCGTTCAACATGGTTTCCAGAGGATCCCCGCTTAATCTGAGCCATTTCCGGCTGCTCAAGCGAATCGGGTACGGGGACATAGGGAGCGTCTATCTGGTAGAACTAAGAGGGACTGATGCCTATTTTGCTATGAAAGTGATGGACAAAGCCTCCCTCGCAAATCGAAACAAGCTACTGAGAGCACAGACGGAGAGGGAGATACTTGGCCTTCTAGACCATCCATTCTTGCCCACACTCTACTCCTACTTCGATACTGACAAGTTCTATTGCTTGGTCATGGAGTTCTGCAGCGGAGGGAATCTCCATGCGCTGCGTCAGAAGCAACCCAACAAGTATTTTAACGAGGAAGCAGCAAGGTTCTATGTATCCGAAGTCTTGCTGGCGCTTGAGTACCTGCACATGCTAGGCATTGTGTACAGAGACTTAAAGCCTGAAAACGTGCTGGTGCGAGACGAAGGTCACATCATGCTCTCGGATTTTGATCTCTCACTGCGCTGCTCTGTGAACCCCATGCTAGTGAAGCCGTCCTCGGTTCATCATGTAAGTAACGGCAGTGGCGTGGGCGGGAGCTTTAATCATTCTAGTCATGACCCGGGGGCCATTCTAGATGATGAATTTGCAGTGCACGGCTGCATGCAGCCGGCCTCAAACTTTATTCCTCGAATTCTTCCTTCAAAGAAGAACCGCAAATCTAAATCCGATTTCGGGCTCTTTGTGGGAGGGTCCCTCCCAGAACTGATGGCGGAGCCCACAAACGTGCGATCCATGTCATTTGTGGGTACCCATGAGTACTTAGCCCCGGAGATCATCCGAGGAGAGGGTCATGGAAGCGCCGTGGACTGGTGGACGTTTGGGATCTTATTGTACGAGCTACTGCACGGGACAACTCCCTTCAAGGGTTCCGGGAATCGAGCCACCCTGTTCAACGTTGTAGGACAGCCTTTGAGATTCCCAGAAAATCCTCAGGTGAGTTTTATGGCGCGGGATCTAATACGTGGGCTTCTCGTGAAGGAGCCTCAGAAGCGAATTGCGTACAAAAGGGGCGCCACCGAAATAAAACAACACCCTTTCTTCGAGGGCGTCAACTGGGCCCTGGTCAGAAGCGCCATGCCTCCTCACATACCTGAGCCCGTTGACTTCTCACAATTTGCAGCCAAAGAGGCAGCCCCTGCAGACAAGAAGATGGCTGATGTTGTGGCCGATACCAACACTACTAGTACTTCTAGTAATGATTCTTCTTTCATAGATTTTGAGTACTTCTAG | 1614 | 49.63 | MYGYKYDNYRLYFHQLADMLGLNQLFQMNLKASELLASAEPKKTNASPLGCDQLQTRSTGGAVAISRASSSPKINKNIIPSQVPNYGQWSGNGSRCDSLESSSVPLRPHTGGDVRWDAFNMVSRGSPLNLSHFRLLKRIGYGDIGSVYLVELRGTDAYFAMKVMDKASLANRNKLLRAQTEREILGLLDHPFLPTLYSYFDTDKFYCLVMEFCSGGNLHALRQKQPNKYFNEEAARFYVSEVLLALEYLHMLGIVYRDLKPENVLVRDEGHIMLSDFDLSLRCSVNPMLVKPSSVHHVSNGSGVGGSFNHSSHDPGAILDDEFAVHGCMQPASNFIPRILPSKKNRKSKSDFGLFVGGSLPELMAEPTNVRSMSFVGTHEYLAPEIIRGEGHGSAVDWWTFGILLYELLHGTTPFKGSGNRATLFNVVGQPLRFPENPQVSFMARDLIRGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSAMPPHIPEPVDFSQFAAKEAAPADKKMADVVADTNTTSTSSNDSSFIDFEYF | 537 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 11935714 | 11937327 | - | Conep08aG0166900.1 | Cone8ag1613 | 444162 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone8ag1613 | 537 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 254 | 266 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cone8ag1613 | 537 | ProSiteProfiles | Protein kinase domain profile. | 133 | 475 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone8ag1613 | 537 | FunFam | Serine/threonine-protein kinase AGC1-5 | 131 | 216 | - | - | |
Cone8ag1613 | 537 | SUPERFAMILY | Protein kinase-like (PK-like) | 130 | 505 | IPR011009 | - | |
Cone8ag1613 | 537 | SMART | serkin_6 | 133 | 475 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone8ag1613 | 537 | Gene3D | Phosphorylase Kinase; domain 1 | 132 | 216 | - | - | |
Cone8ag1613 | 537 | CDD | STKc_phototropin_like | 131 | 496 | - | - | |
Cone8ag1613 | 537 | FunFam | serine/threonine-protein kinase D6PK-like | 217 | 284 | - | - | |
Cone8ag1613 | 537 | Gene3D | Transferase(Phosphotransferase) domain 1 | 368 | 493 | - | - | |
Cone8ag1613 | 537 | Gene3D | Transferase(Phosphotransferase) domain 1 | 217 | 282 | - | - | |
Cone8ag1613 | 537 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 476 | 537 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone8ag1613 | 537 | FunFam | Serine/threonine-protein kinase AGC1-7 | 368 | 493 | - | - | |
Cone8ag1613 | 537 | PANTHER | FLIPPASE KINASE 1-RELATED | 88 | 510 | - | GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER) | |
Cone8ag1613 | 537 | Pfam | Protein kinase domain | 134 | 283 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cone8ag1613 | 537 | Pfam | Protein kinase domain | 369 | 475 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone1ag0068 | Cone-Chr1:340368 | Cone8ag1613 | Cone-Chr8:11935714 | 1.00E-183 | dispersed | |
Cone5ag1793 | Cone-Chr5:12725115 | Cone8ag1613 | Cone-Chr8:11935714 | 8.15E-184 | dispersed | |
Cone8ag1349 | Cone-Chr8:10827919 | Cone8ag1613 | Cone-Chr8:11935714 | 4.01E-106 | dispersed | |
Cone8ag1613 | Cone-Chr8:11935714 | Cone9ag1115 | Cone-Chr9:7183955 | 2.55E-112 | dispersed | |
Cone12ag1543 | Cone-Chr12:10981674 | Cone8ag1613 | Cone-Chr8:11935714 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
83150 | PF03181 | BURP | 1.40E-72 | No_clan | Cone | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone8ag1613 | - | - | - | 0.0 |