Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0003 ATGAGAAATTTCTTGGAGGCTGTTAAAAACATGAAGCTCTTGACGTTTGAAGCATCTGATTTGGAAAAGGGCGGTTCGTCAAGTAAAGTTGTAGACTGTATCCTCTGTCTAAAAGGTTATTACGAGTGGAAGCAAGTGGGTGGAGTTGGGGTTTGGAGGTATGGTGGGACTGTGAGGATCACTTCCTTCCCCAACCCCAAGGGATCATCGTCCTCTTCGGATGGAAGTGAATGTACTGATGAATCGATTGATGAATATGAATCATCACAGTACGAGCAGCTATTGGAGTTTCTGAATCTTTCTGATCAAGCCTCAATCAAAGAATCCAGAATTTCATCTATGCTGCCTTTTCTATTTGATCATTTTGGACTCAGACTACTGCAGGCTTACCTGCGTGAGGGCAGTGAGTTTGAAGACTTGCCTTTGAATGCAATGGTAATTGATGCATTGCTCGGTAAGGTAGTCAATGACTTCTCTGCATTGATCGTTTCTCAAGGCAATCAGCTAGGATTGTTTCTGAAGAAGATATTAAGAAGTGATGTCGGTTCTATATCGAAGTTTCAATTTGTAGAGGCCATTTCCCGTTATCTTGGTCGAAGAGCTAGTCAGGTATCAAAGGATTTTGCCAAATTTTGTGTCTGTGGAGGTAAACCTAAGGATATTCAGCACAAGGACGGCATTCCACCAGAAGCAATTAATATTCACCAAAAGAAGCTAGATGAACTAAACTCGTCACTTCAAGAGACAAAACTAGAAGTCAAACAGGCTCAATCAGAGTGGGAGAAAGAACTTACAAGACTATATCATTATCTCAACGGCCTACAGATGGCTTCCTCTTCTTATCACAAGGTGTTAGAAGAAAATCGCATTTTGTACAATCAAGTCCAGGACCTCAAAGGAACCGTCCGGGTCTACTGCAGAGTAAGGCCTTTCTTAACAGGCCAGTTAAATATGCAGTCTACTGTAGACTATATTGGAGAAAACGGAAATATCATGATCATGAACCCCCTAAAACAAGGCAGAGATTCAAGAAGAGTATTTTCATTTAACAAAGTGTTTGGGACGGATGCTACACAAGATCAAATATATATCGACACTCAACCGCTGATCAGGTCTGTTCTGGATGGTTTTAATGTATGCATCTTTGCATATGGACAGACAGGCTCAGGCAAGACATACACAATGAGTGGCCCCAATTTGATGACCGGGGAGTCCTTGGGAGTAAATTATCGAGCTCTACGGGACTTGTTTCAGATATCAGAGGCAAGAGCAGAAATGATAAAATATGAAGTTGGAGTTCAGATGATTGAGATATATAATGAACAAGTGAGGGACCTATTAGTCAATGCTGGGTCAAGCAGAAGATTAGATATACGGAATAATTCTCAACTGAGTGGACTAAATGTACCTGATGCAAGTTGGGTTCCGGTAACCTCTACACAGGATGTTGTTGATTGGATGAAGGTCGGTCAAAAGAATCGCGCTGTAGGTGCTACAGCTCTAAATGAGAGAAGTAGCCGTTCTCATAGTATATTAACAGTTCATGTCCACGGAAGAGAATTGCACAATGGTACCATTCTTAGAGGGTGCCTTCATCTGATAGATTTGGCTGGAAGCGAAAGAGTAGATAAATCTGAGGCTGTTGGTGAAAGGCTCAAGGAAGCACAGCACATAAATAAATCACTCTCTGCACTTGGGGATGTTATTTACGCTCTTGCACAAAAGAGCTCCCACATTCCTTACAGAAACAGCAAGCTTACTCAAGTGCTACAAGATTCTCTAGGCGGGCAAGCAAAAACATTGATGTTTGTACATATAAATCCTGAAGTTAATGCTCTTGGGGAGACGATTAGCACACTCAAATTTGCTGAGAGGGTCGCCTCCATAGAATTAGGCGCAGCACGATCTAATAAAGAAACTGATGAAATCAGAGAGCTTAAAGAAGAGATATCAAATCTAAAGTCAGCACTGGAGAGTGAGGAAACTGAAGTCGATCGACTGAAAGGTGGGAATACTAAAACTACTACAGAAATCCAGAAAGCCAGAGCTGCTTCGCCCTTGCAAGTTCCAAGATATGGTGTTGCTGCTAACAGTTTTGAGACCAGAAGCTGTTCATTGGGTAAGCAAAGGAGGTTGAGGTTTCCCACTGGGTCTGCAGAGAAGGAGATTGCTCCAAATATGTCTTTCCAAGATGAAGAGCAAACAACGAGCTCTGGAAAACCAAGGCAGCCATCCCCACCTGTTAGGAGGTCATTATCCACTGACAGAGGGGCTATTATTAGAATCAGCAAGGTCAAGGTTGACAAAAATGAGAACCAAGCAATTACTAAGCTTCCATTTCCAGCAAGAGTGCCCTCTATCAAATCAACAATGCCATCTGCTGATAACAATGGAAGAGTGTATAACTACTCTCAAGAGGCGGCTAAGCAAAATAACTGTTCTGATACATTCTTTAGCCGCCATAAAGGGTCGAGCTCCAAGAAAGTGTATTCGGAATATGAAGTAGAGCATTTTGAGGAAGCTCTCAATATAAAGCAAGGTGGTATCAGGAAACTCAAGACTGAGAGCAAGGCTAAGTCGAAGCAAAGTCAACTACCTGCAGCATCAACTACATTGCTTGCTGATAATGTTGTTGATGAGATTGAGGAGACTTGGAATAGTAGTGACTTCTCTCAGACCGAAAATGATCACATTCTTGCTGTGTCACCTGTGCATCAAGCTTTGAAGGTGAAAAGGCTTCGACACAAGTCACACAACTTGTTAAGCAACTCCCATAATCCAGAACCAAGAGAAGCAATGCCAAGGGATGAACGCATATTGGTAGTAGCAGAGAAACTCGAAAAGAAGGTACCAAATGGGGGAGTCCGTTATCCAAAGGAAGGAGGCAGCACATCTTTGAAAGAATTCACAAGGAGCCGATCGACACCTCGCGGAAAGTTATTGGTTTTACCCTGA 2955 42.4 MRNFLEAVKNMKLLTFEASDLEKGGSSSKVVDCILCLKGYYEWKQVGGVGVWRYGGTVRITSFPNPKGSSSSSDGSECTDESIDEYESSQYEQLLEFLNLSDQASIKESRISSMLPFLFDHFGLRLLQAYLREGSEFEDLPLNAMVIDALLGKVVNDFSALIVSQGNQLGLFLKKILRSDVGSISKFQFVEAISRYLGRRASQVSKDFAKFCVCGGKPKDIQHKDGIPPEAINIHQKKLDELNSSLQETKLEVKQAQSEWEKELTRLYHYLNGLQMASSSYHKVLEENRILYNQVQDLKGTVRVYCRVRPFLTGQLNMQSTVDYIGENGNIMIMNPLKQGRDSRRVFSFNKVFGTDATQDQIYIDTQPLIRSVLDGFNVCIFAYGQTGSGKTYTMSGPNLMTGESLGVNYRALRDLFQISEARAEMIKYEVGVQMIEIYNEQVRDLLVNAGSSRRLDIRNNSQLSGLNVPDASWVPVTSTQDVVDWMKVGQKNRAVGATALNERSSRSHSILTVHVHGRELHNGTILRGCLHLIDLAGSERVDKSEAVGERLKEAQHINKSLSALGDVIYALAQKSSHIPYRNSKLTQVLQDSLGGQAKTLMFVHINPEVNALGETISTLKFAERVASIELGAARSNKETDEIRELKEEISNLKSALESEETEVDRLKGGNTKTTTEIQKARAASPLQVPRYGVAANSFETRSCSLGKQRRLRFPTGSAEKEIAPNMSFQDEEQTTSSGKPRQPSPPVRRSLSTDRGAIIRISKVKVDKNENQAITKLPFPARVPSIKSTMPSADNNGRVYNYSQEAAKQNNCSDTFFSRHKGSSSKKVYSEYEVEHFEEALNIKQGGIRKLKTESKAKSKQSQLPAASTTLLADNVVDEIEETWNSSDFSQTENDHILAVSPVHQALKVKRLRHKSHNLLSNSHNPEPREAMPRDERILVVAEKLEKKVPNGGVRYPKEGGSTSLKEFTRSRSTPRGKLLVLP 984
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 24355 29577 + Conep09aG0000300.1 Cone9ag0003 444166

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0003 984 MobiDBLite consensus disorder prediction 728 750 - -
Cone9ag0003 984 SMART kinesin_4 299 637 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag0003 984 ProSiteProfiles Kinesin motor domain profile. 301 629 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag0003 984 MobiDBLite consensus disorder prediction 950 984 - -
Cone9ag0003 984 Gene3D - 1 44 IPR036872 -
Cone9ag0003 984 MobiDBLite consensus disorder prediction 710 756 - -
Cone9ag0003 984 MobiDBLite consensus disorder prediction 660 680 - -
Cone9ag0003 984 Pfam Kinesin motor domain 307 629 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag0003 984 FunFam kinesin-like protein KIN-14F 296 670 - -
Cone9ag0003 984 Gene3D Kinesin motor domain 296 669 IPR036961 -
Cone9ag0003 984 SUPERFAMILY Calponin-homology domain, CH-domain 2 62 IPR036872 -
Cone9ag0003 984 PRINTS Kinesin heavy chain signature 376 397 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag0003 984 PRINTS Kinesin heavy chain signature 530 548 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag0003 984 PRINTS Kinesin heavy chain signature 579 600 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag0003 984 PRINTS Kinesin heavy chain signature 499 516 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag0003 984 Coils Coil 232 259 - -
Cone9ag0003 984 PANTHER KINESIN-LIKE PROTEIN KLP-3 1 855 IPR027640 GO:0003777(InterPro)|GO:0007017(PANTHER)|GO:0007018(InterPro)|GO:0008017(PANTHER)|GO:0015630(PANTHER)
Cone9ag0003 984 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 665 IPR027417 -
Cone9ag0003 984 Coils Coil 636 670 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0003 K27887 - - rcu:8271851 1260.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1242 Cone-Chr14:10038504 Cone9ag0003 Cone-Chr9:24355 0 dispersed
Cone15ag1267 Cone-Chr15:9978720 Cone9ag0003 Cone-Chr9:24355 0 dispersed
Cone8ag0202 Cone-Chr8:1062345 Cone9ag0003 Cone-Chr9:24355 5.95E-90 dispersed
Cone8ag0301 Cone-Chr8:1741996 Cone9ag0003 Cone-Chr9:24355 4.95E-183 dispersed
Cone9ag0003 Cone-Chr9:24355 Cone9ag0105 Cone-Chr9:455957 1.40E-80 dispersed
Cone6ag0001 Cone-Chr6:14249 Cone9ag0003 Cone-Chr9:24355 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g727 Blo03g00494 . . . . . . . . . Cma01g01058 Cma09g01033 Car01g00932 Car09g00939 . Cpe06g00841 Cpe02g00838 Bhi09g01820 . . . . Mch11g1312 . . . . . . . . Cone6ag0001 Cone9ag0003 . . Lsi02g01801 Csa07g01062 . . . . . . Bpe11g00603 . . Bma14g00667 . Cmo01g01099 Cmo09g01035 . . . . . . . . . . . . . Cla09g02100 Cam09g2186 Cec09g2255 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007328 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 2 1 1 1 1 1 36