Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0007 ATGGCCAGCAGCAGAGACAGAGACGATCCTCTCTCACTCTCAGCTAACCCCTCCTACTCTTCCTCCCCAATTGCTGTCTCTGACAGCTTCCTCTCCGACCCAAATTCCCACCTTGGAAGCGCCTCTGCCTCTGGAAGCTTCCAGAACGAGGGTCTTCTCGCCGATTACAGTGCAAATAGCAGTGATGCCGAGTTTGGCTTCTCTCGCCCTGACTTCCGCCAGAACCAGCTAGCCGGGACTGTCGACCTCTATGAGCGCCATGTTTTCCTTTGCTACAAGAACCCTCAGGTTTGGCCCCCCCGGATCGAAGCCGCAGAGTTTGATCGCTTGCCCAGGCTTCTCTCTGCCGCTGTAATGGCCAGGAAGCCTCAAATGAGGAAGCAAACCTGCCTTACAATTTGTGAGGGGCATGATGGAACCGAGACATCAAATGGGGATGTTTTAATTTTTCCAGACATGATCAGATACAGGAGGTTGACGCATTTTGATGTGGACACATTTGTGGAAGAAGTTCTTGTGAAGGAAGGTGAATGGCTCCCTGGAACTCCTGAAACACTAAAGGGTTCGTATGTCTTTGTGTGTTGTCATGGGTCCCGTGATCGCCATTGTGGAGTTTGTGGACCAGTTCTTGTGAGCAGATTCAGGGAAGAGAGAGAATTTCTTGGTCTTCAAAACAAAGTGTCTATTAGCCCATGCTCACACATTGGGGGACATAAATATGCAGGAAATGTTATAATATTTGGGTCCAATGTTGATGACCAAGTCACAGGGCACTGGTATGGATATGTTTCCCCAGATGATGTACATACATTGCTTGATCAACATATTGGGAAGGGGAAAATTATAGATTGGCTGTGGAGGGGCCAGATGGGTTTGTCAGAAGAAGAGCAGAAGAAAACCCAAGAAGTAAGGCTCCAACTAAATGGGGGAACAAGTGTTCAAGGAAGCAGCAGGGACGAGATGACACAGAAGATGCGGACAATTGATCTGAATACTGGTGTGTCTAGTTGTGGTGTTGAGTTTGTGGGCTGTTGTCAGGAAGAGGGCAGTTGTTGTTCATCTTCTTCTTGCTGTCAGAATCCTGAAGTGATGAATGATTCAGACGGGAATGGGAAAGGGAGTGAGATTGGCTCAAGGAAGAGCCCCAGAAAAGTAATTTCGCGAGTGAATAGTGGGAAAGGGGCTGCTCCTCGCAAGGTTTGTGCAATGCCAACTTGGATTGAGAGCTGGGAGCGTGAGGATACATATGCAGCTGCAGCTGTTGTTTGTGCTGCTGTGTCTGTTGCCGTTGCTTATAGCTGCTACAAACAGTTGACATGA 1320 48.56 MASSRDRDDPLSLSANPSYSSSPIAVSDSFLSDPNSHLGSASASGSFQNEGLLADYSANSSDAEFGFSRPDFRQNQLAGTVDLYERHVFLCYKNPQVWPPRIEAAEFDRLPRLLSAAVMARKPQMRKQTCLTICEGHDGTETSNGDVLIFPDMIRYRRLTHFDVDTFVEEVLVKEGEWLPGTPETLKGSYVFVCCHGSRDRHCGVCGPVLVSRFREEREFLGLQNKVSISPCSHIGGHKYAGNVIIFGSNVDDQVTGHWYGYVSPDDVHTLLDQHIGKGKIIDWLWRGQMGLSEEEQKKTQEVRLQLNGGTSVQGSSRDEMTQKMRTIDLNTGVSSCGVEFVGCCQEEGSCCSSSSCCQNPEVMNDSDGNGKGSEIGSRKSPRKVISRVNSGKGAAPRKVCAMPTWIESWEREDTYAAAAVVCAAVSVAVAYSCYKQLT 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 48287 51913 + Conep09aG0000700.1 Cone9ag0007 444170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0007 439 SUPERFAMILY Thioredoxin-like 190 292 IPR036249 -
Cone9ag0007 439 MobiDBLite consensus disorder prediction 9 23 - -
Cone9ag0007 439 Pfam Sucrase/ferredoxin-like 77 288 IPR009737 -
Cone9ag0007 439 FunFam APD1p protein 188 287 - -
Cone9ag0007 439 Gene3D Glutaredoxin 188 287 - -
Cone9ag0007 439 MobiDBLite consensus disorder prediction 368 391 - -
Cone9ag0007 439 MobiDBLite consensus disorder prediction 1 23 - -
Cone9ag0007 439 PANTHER ACTIN PATCHES DISTAL PROTEIN 1 44 430 IPR009737 -
Cone9ag0007 439 CDD TRX_Fd_Sucrase 188 290 IPR009737 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0007 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0942 Cone-Chr16:9562352 Cone9ag0007 Cone-Chr9:48287 6.80E-104 dispersed
Cone14ag1254 Cone-Chr14:10096947 Cone9ag0007 Cone-Chr9:48287 5.32E-136 transposed
Cone6ag0004 Cone-Chr6:39090 Cone9ag0007 Cone-Chr9:48287 1.33E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g688 . . . . Bpe09g00118 . . Bma13g01123 . . Cma01g01068 Cma09g01019 Car01g00944 Car09g00923 Sed04g3640 Cpe06g00827 Cpe02g00830 Bhi09g01790 Tan01g3206 Cmetu01g1047 . . Mch11g1291 . . . . . . . . Cone6ag0004 Cone9ag0007 . . . . . . . Blo10g00873 . Bda12g00973 . . . . . Cmo01g01110 Cmo09g01022 . . . . . . . . . . . . . Cla09g02087 Cam09g2174 Cec09g2240 . . . . . . Chy01g01131 Cme01g00886
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006682 1 1 1 1 1 1 3 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 3 1 0 1 1 1 1 38