Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0012 ATGGTTGACGATGGAGTGAAACAGCCCTTGCTACCAGGATTTAATGTTCCTCCGAGAAGAAGATTTCGGCATTGTAGAAGTGCTCCGCCTGTGGAGTCTCTTCCTATGGAGACGAATGGCATCAGCCTGAATGCACGATCTGGAGCCATGTTTGGGAACATGCACCCGAATTTCAGAGCGGTAACCATCTATTTAGCTGCCTACTTAGGTGTGGGAACTGTATGTTTCTACTTGGTCAGTAACCAGATCAAGGGGGAAAAGACAGATGCAATAATTGACGCTGTTTACTTTGTCATTGTTACGATGACAACTGTTGGATATGGAGACCTTGTACCAAACAGTAACCTCACAAAGCTATTAGCTTGTGCTTTTGTCTTCACAGGGATGGCTTTGGTTGCCCTCGTACTTAGCAGAGCTGCTGACTCTTTGGTCGAGAAGCAGGAGATATTGCTGGTTAAGGCCCTACATAAACATGATAAGGACCGACCAGTGGAGAGCACGAAAGAAATAGATACGAATAAAGAGAAAATCAAGTGCTCAATGGTCTCTTCCATTCTTCTGCTGCTTATAGTTTGCGGGACCATTTTTCTAATATATGTTGAGAAATTGGACCCGGTTGATGCATTTTATTGTGTTTGTTCTACCATTACAACTCTAGGGTATGGAGATAAGAGCTTCTCAACAAGTGAAGGGCGTGTGTTTGCAATATTCTGGATTTTGACAAGCACCATTTGTTTGGCTCAAGTTTTCCTTTATATTGCCGAACTAAACACAGTAACAAGGCAAAGGGCATTTGTGAAGTGGGTTCTGAATAGGAAGGTGACAAGGTCGGATCTGGAGGCAGCTGATCTGAATGATGATGGTACTGTGGAGGCAGCTGAGTTTGTGATATACAAGCTGAAAGAGATGGGGAAGATTAGTCAGGATGATATCTGTGTTTTATTGAGAGAGTTTGAGGATCTTGATGTTGATCAGTCGGGGACATTGTCAGTAGCCGATATCACACTTGCTCAGTAG 1017 43.56 MVDDGVKQPLLPGFNVPPRRRFRHCRSAPPVESLPMETNGISLNARSGAMFGNMHPNFRAVTIYLAAYLGVGTVCFYLVSNQIKGEKTDAIIDAVYFVIVTMTTVGYGDLVPNSNLTKLLACAFVFTGMALVALVLSRAADSLVEKQEILLVKALHKHDKDRPVESTKEIDTNKEKIKCSMVSSILLLLIVCGTIFLIYVEKLDPVDAFYCVCSTITTLGYGDKSFSTSEGRVFAIFWILTSTICLAQVFLYIAELNTVTRQRAFVKWVLNRKVTRSDLEAADLNDDGTVEAAEFVIYKLKEMGKISQDDICVLLREFEDLDVDQSGTLSVADITLAQ 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 59796 62396 - Conep09aG0001200.1 Cone9ag0012 444175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0012 338 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 61 284 IPR003280 GO:0005267(InterPro)|GO:0005887(PANTHER)|GO:0009705(PANTHER)|GO:0015271(PANTHER)|GO:0016020(InterPro)|GO:0022841(PANTHER)|GO:0030322(PANTHER)|GO:0071805(InterPro)|GO:0071805(PANTHER)
Cone9ag0012 338 FunFam Calcium-activated outward-rectifying potassium channel 1 55 150 - -
Cone9ag0012 338 SUPERFAMILY EF-hand 277 334 IPR011992 -
Cone9ag0012 338 ProSitePatterns EF-hand calcium-binding domain. 322 334 IPR018247 -
Cone9ag0012 338 ProSitePatterns EF-hand calcium-binding domain. 283 295 IPR018247 -
Cone9ag0012 338 Gene3D - 54 149 - -
Cone9ag0012 338 Gene3D - 164 265 - -
Cone9ag0012 338 Pfam Ion channel 64 144 IPR013099 -
Cone9ag0012 338 Pfam Ion channel 185 256 IPR013099 -
Cone9ag0012 338 SUPERFAMILY Voltage-gated potassium channels 178 275 - -
Cone9ag0012 338 SUPERFAMILY Voltage-gated potassium channels 58 151 - -
Cone9ag0012 338 PRINTS Two pore domain K+ channel signature 100 128 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
Cone9ag0012 338 PRINTS Two pore domain K+ channel signature 217 226 IPR003280 GO:0005267(InterPro)|GO:0016020(InterPro)|GO:0071805(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1609 Cone-Chr5:11296569 Cone9ag0012 Cone-Chr9:59796 6.96E-58 dispersed
Cone9ag0012 Cone-Chr9:59796 Cone9ag0915 Cone-Chr9:4502453 2.87E-50 dispersed
Cone6ag0013 Cone-Chr6:94055 Cone9ag0012 Cone-Chr9:59796 4.56E-208 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0012 K05389 - gmx:100800137 434.876