Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0016 ATGTCTGGAAATAGTTACTGTTTTGTGGAGTGGAAAGAGCTGTTTGTTTCGCAAGAGCGAGGTAATAGAGTAGTGCATTACTTTCTCAAGGATTCTGTTGGGGTCACCACTCTCGCCGTAGTTGGCACCGAGAGGAGTGTGAGGCACATGTTCTATGTTGTTTCTGATGAGTTTTTGCAAGCCTATGGGAAAGAAAGTTCTGTCCATAATGGTTTTAAATGGAGATCAAGGAGAGAGGTTGTGGATTGGCTTACATCTATGCTCTCAAAGCAGCATCTACATGGGGATCATTCAGAATCTCTGAAGTATGAGGCAACAAAAGCTCTAGGATCTCAACTTCTGAAGAATGGAGTAAGTTTCCCAGAGTCTGATGTACCTGAGAACAAGGTTCGTTCTGCAAGGAATTTCAGTGGACCTAGTACTGATATTGTTTGGTCTGGTGCCGCATGGACATGTGGTAAACAGCTCAAACACTACCCAGCATTTTGCAGAAATGGGACTTCCATTGCGATCCAATCTTTTGTTTTTGTCATGGCCAAGGGAGAAAATCACTACCTTGCTTACCTGGAAGATATGTATGAAGACAAGAAGGGTTCAAAAAAGGTTAAAGTGAGATGGTTTCACCACAACCAGGAAGTGAAGGGGATAATTACTCTACGCAATTCTCACCCAAAAGAAGTTTTCATCACACCATATGCGCAGGTCATTAGTGCAGAATGTGTTGATGGTCCTGCTTCAGTCTTAACTCGAGAGCATTATGATAAATGCCTTGATGCTTTTCCTCACGCGTTGTTATCCAGAGTTCATCTCTGCTATAGGCAGTTCAGAAGCAACCGACTGAAGCCTTTTGACTTGACTAGACTGCATGGTTACTTTGATCAGCCAATTCTTGTCTCTTGTTTGGGTCTCAATGCCATCTCAAAACCTGAATCCACTTGTGATAGCTTGACTGGGGAAGAAGATGAAGATGCGGGATCTGGTGACAATTTAAAGCTGGGAGTTAAGAGGATGAGAACTAGTAAAGGATCTCAAGTTCTTGAGCTAGAAAGGTTCAGAGTAAGGAGTTCTGGTAAACGTGGCCAGATGGAGAGACATGTACCTTTCCAGAAATTAAACTGCAACTTGTCAGACAGGAAATGGCTTCCTATCAAGCATGTTGAATGTTGGCCTAGGACCTACCCGCTCTTTAAGGTGAATGAAAAAGTAGAGCTGCTTTGTCAAGATAGTGGCATCAGAGGCTGCTGGTTCAGGTGTACTGTCTTGCATTTATCACGGAAACAAATGAGAGTTCATTATGATGATTTACAAGATGAGGATGGATGTGGAAATCTTGAGGAATGGATCCCAACTTTTAAGATGGCTATGCCTGACAAACTTGGCATGAGACACTCTGGACGTCCAACTGTACGCCCAGTCCCCCCACAAGGGCAAACAGACCATGCTCTTGAGATTGGGGCCGCAGTTGATGCATGGTGGAGTGATGGCTGGTGGGAAGGGGTTTTTACCGGACTTGATGACTCTCAGAATGATAATATGCATGTTTATATTCCTGGTGAAAGCTTATTCTTGAATGTACACAAGAAGGACCTGAGAATATCTAGAGATTGGTTGGGAACCCAATGGGTTGATATTGAGGCAAAGCGTGACATACTGTCATCAATATCTGCAGTTATCAGGACAGACAGTAAGCTTTTCGCCTCCGAGGATCCCAACTCTGGCGATTTTGTTACATCAGATGTCGGAGTAGCCACTAGTAGTAAAAAACTTGATATTCTTGATGAGTATAAAATTAACTCAACTGCATCAGCCAGTCCTGGGAAGCTTCCTGAAGATGTAGATGACGTGAACTGTAATAAGCAACTGCCAATAATCAAGGATGATGTAGCCACCAAAAATGGTTGTGGCAATACGGGTGATGTCCAAGATCACAACAGTGATGTCAAAGCTGATGATACTGATATTAAATCGGTAATGGAGGCGTGTAGAGGTATCGAACAGAAGGACGGACTGGCATAA 2016 43.35 MSGNSYCFVEWKELFVSQERGNRVVHYFLKDSVGVTTLAVVGTERSVRHMFYVVSDEFLQAYGKESSVHNGFKWRSRREVVDWLTSMLSKQHLHGDHSESLKYEATKALGSQLLKNGVSFPESDVPENKVRSARNFSGPSTDIVWSGAAWTCGKQLKHYPAFCRNGTSIAIQSFVFVMAKGENHYLAYLEDMYEDKKGSKKVKVRWFHHNQEVKGIITLRNSHPKEVFITPYAQVISAECVDGPASVLTREHYDKCLDAFPHALLSRVHLCYRQFRSNRLKPFDLTRLHGYFDQPILVSCLGLNAISKPESTCDSLTGEEDEDAGSGDNLKLGVKRMRTSKGSQVLELERFRVRSSGKRGQMERHVPFQKLNCNLSDRKWLPIKHVECWPRTYPLFKVNEKVELLCQDSGIRGCWFRCTVLHLSRKQMRVHYDDLQDEDGCGNLEEWIPTFKMAMPDKLGMRHSGRPTVRPVPPQGQTDHALEIGAAVDAWWSDGWWEGVFTGLDDSQNDNMHVYIPGESLFLNVHKKDLRISRDWLGTQWVDIEAKRDILSSISAVIRTDSKLFASEDPNSGDFVTSDVGVATSSKKLDILDEYKINSTASASPGKLPEDVDDVNCNKQLPIIKDDVATKNGCGNTGDVQDHNSDVKADDTDIKSVMEACRGIEQKDGLA 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 91229 93947 + Conep09aG0001600.1 Cone9ag0016 444179

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0016 671 Gene3D - 138 271 IPR043151 -
Cone9ag0016 671 SMART agenet_At_2 394 459 IPR014002 -
Cone9ag0016 671 SMART agenet_At_2 480 538 IPR014002 -
Cone9ag0016 671 Pfam BAH domain 172 257 IPR001025 GO:0003682(InterPro)
Cone9ag0016 671 CDD Tudor_Agenet_AtDUF_rpt1_3 396 474 - -
Cone9ag0016 671 ProSiteProfiles BAH domain profile. 167 286 IPR001025 GO:0003682(InterPro)
Cone9ag0016 671 SMART BAH_4 167 286 IPR001025 GO:0003682(InterPro)
Cone9ag0016 671 CDD BAH_plant_1 162 291 - -
Cone9ag0016 671 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 367 638 - -
Cone9ag0016 671 Pfam Agenet domain 400 474 IPR008395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0016 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag1811 Cone-Chr5:12810282 Cone9ag0016 Cone-Chr9:91229 3.44E-162 dispersed
Cone6ag0454 Cone-Chr6:2232050 Cone9ag0016 Cone-Chr9:91229 5.06E-70 dispersed
Cone9ag0016 Cone-Chr9:91229 Cone9ag0466 Cone-Chr9:2217182 3.62E-77 dispersed
Cone6ag0017 Cone-Chr6:111705 Cone9ag0016 Cone-Chr9:91229 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g638 . . Bda07g00399 . . . . . . . Cma01g01084 . Car01g00960 Car09g00907 . . Cpe02g00814 . . . . . . . . . . . . . . Cone6ag0017 Cone9ag0016 . . . . . . . . . . Bpe11g00579 . . Bma14g00175 . Cmo01g01130 Cmo09g00997 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003848 2 1 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 2 1 1 1 1 1 1 2 1 43