Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0017 ATGCTCTGTCTCGCTTTATCGGGTGGCATTCAGGTCGGCATCTCACAAACTGGAGATTACACCAGGAATTATATAAGCTGGGAGGATTTGAAAGTTGAGGATAATAGGGCGAGTGTGAATGGTGGAGATGAATACAATGGAAGCACAATAATCGTGGTTGATCAGAATGGAGGAGGAGATTCGGTTACCGTTCAAGGGGCAGTTGATATGGTCCCCCACTTTAACTCCCAAAGAGTCAAGATTTACATTCTTCCTGGGCTTTACAGGCATGTTCTTGAACATTTTATCATCTTCTTAGTATCCAATATCCAATTCTGCGTTAGTTTATGCTTTGATTCAATCAATGAAATTTACACAATCATATTTCCGGCTTGTTTCAAAAACATATGCAGAGAGAAGGTACTCATACCAATTACAAAGCCATATATTTCATTCATAGGGAATGAGAAAAGGGCCTCTGACACTATATTATCCTGGAACAATAAAGCATCAGACAAAGACACCAATGGATGTGAACTAGGAACATATAGATCAGCATCTGTGGCCATAGAATCTGATTACTTTTGCGCTTCTTCGATCACTTTCGAGAACACAATAGGTGCAGTGCCTGGTGGATATGGAATGCAAGCAGTGGCACTCAGAATTGCTGGGGATAAAGCAGTGTTCTATAAAGTCAGAGTGTTGGGAGAACAGGACACACTTTTAGATGAGACTGGATCACATTACTTCTTCAACTGTACTATCGAAGGCAGTGTTGATTTTATATTTGGAAGATCAAGGTCACTCTATCGGGGCTGTTTTATAAGGTCAAAAGCTGATAACTATGGAGCAATTGCAGCTCATCACAGAGATTCACCAGATGAAGATTCTGGGTTTTCATTTGTCAATTGCATAATCAATGGAACAGGAAAGATATTCTTGGGAAGGGCCTGGGGAAACTACTCAAGAACAATATATGCTTACTGTTACATTCAGGATATCATAACTCCTCCAGGTTGGAGTGACTGGAACTACCCATCCAGGCAAAGAACGGTGGAGTTTGGGGAATATAATTGCAGGGGAAAAGGTGCAGACACAAAGGGTCGGGTTCCATGGTCCAAGTCTTTCAGCTATGATGAAGTGAAGCCCTTTCTGGGTATGAAGTTCATAGGTGGAGAGCAATGGCTTAGATTATAG 1176 41.41 MLCLALSGGIQVGISQTGDYTRNYISWEDLKVEDNRASVNGGDEYNGSTIIVVDQNGGGDSVTVQGAVDMVPHFNSQRVKIYILPGLYRHVLEHFIIFLVSNIQFCVSLCFDSINEIYTIIFPACFKNICREKVLIPITKPYISFIGNEKRASDTILSWNNKASDKDTNGCELGTYRSASVAIESDYFCASSITFENTIGAVPGGYGMQAVALRIAGDKAVFYKVRVLGEQDTLLDETGSHYFFNCTIEGSVDFIFGRSRSLYRGCFIRSKADNYGAIAAHHRDSPDEDSGFSFVNCIINGTGKIFLGRAWGNYSRTIYAYCYIQDIITPPGWSDWNYPSRQRTVEFGEYNCRGKGADTKGRVPWSKSFSYDEVKPFLGMKFIGGEQWLRL 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 94586 96292 - Conep09aG0001700.1 Cone9ag0017 444180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0017 391 Pfam Pectinesterase 129 385 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone9ag0017 391 SUPERFAMILY Pectin lyase-like 131 389 IPR011050 -
Cone9ag0017 391 Gene3D - 46 391 IPR012334 -
Cone9ag0017 391 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 48 390 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
Cone9ag0017 391 FunFam Pectinesterase 112 391 - -
Cone9ag0017 391 ProSitePatterns Pectinesterase signature 2. 248 257 IPR033131 -
Cone9ag0017 391 SUPERFAMILY Pectin lyase-like 49 91 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0400 Cone-Chr8:2461221 Cone9ag0017 Cone-Chr9:94586 1.05E-91 dispersed
Cone9ag0017 Cone-Chr9:94586 Cone5ag0802 Cone-Chr5:3450694 7.31E-37 dispersed
Cone6ag0018 Cone-Chr6:116009 Cone9ag0017 Cone-Chr9:94586 4.42E-256 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0017 K01051 - mdm:103418973 528.094