Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0020 ATGTCAGTCCTCTTCTCCCGTAACTTCTCATCCATGTACTCTGGTATTGACTTTCTCATTCAACCCGTTTTCTTACGTGCCTTTTCCGGTTCACTGCACTTGCTATTGTTGCTCCTTCTGTTTGTTTCTTGGCTGTTTCAAAAATACAAGCTGGGTGCTGGCGACCGTCCAAAGGAAAGGCTTAAGAACACCACAGTTTCTTGCCGCAGGCTGGCCTTACTTTGCTGCCTGGCTGTTTCTCTATTCAATCTTGTATTTTGCTTGCTGAGCTATTTTTATTGGTATACAAATGATTGGTCTGAAGAAAACCTGGCCACCCTTTCGGATTTAGCACTTAGAGCTCTTGCCTGGGCTGCAGTTTCTCTTTACTTACACTCCCATTTCTCTGTTTCTAATGAATCAAAGTTTCCATTTTTATTGAGACTCTGGTGGGGTTTCTACTTCTCTATTTCTTGCTACTCCCTTGTTATCGATTTTGTTCTTGACCAAAAACACCTATCCTTACCGACTCAAAAATTAGTTTCCGATGCTGTCTCCTTCATCACTGGCTTGTTTTTCCTATATGTGGGGTTTTGGGGGAAGAGACAGAGTGAAAACACCAATCTTGAAGAACCCCTTCTTAATGGTGAGTCCAACACTAGTGTCAGCAATGGAATTGAATCAAAGAAGTTAAAAGGGGAAGAGACTGTGACCCCCTTCTCAAATGCTGGAATTTTCAGCATTCTTACTTTCTCTTGGATGGGTCCTTTGATTGCTCTTGGCAAGAAGAAGGCCTTAGACCTTGAGGATGTTCCTCAGCTTGCTAGCACTGATAGTGTTTTGGGGTCCTTTCCGCAGTTCAAAAATAAGATAGAGGCAGAGTGTGGTGCAGTGAGCAAGGTGACCACACTTACTCTGGTGAAGGCATTGTTCTACTCAGCTTGGAAAGACATTCTTTTGACTGCTCTTTTTGCCTTACTCTACATACTGTCCTCTTATGTTGGCCCATATCTTATTGATACTCTAGTTCAATATCTCGATGGTCGAAGGGAATATGAAAATGAGGGTTATGCTTTGGTCTCTGCGTTTTTTCTTGCAAAGCTTGTAGAGTGCTTTTCTCAGAGGCATTGGTTCTTCAGGTTGCAGCTGGTTGGTATTAAGATGCGGTCAGTGCTAATTACATTGATTTACAACAAGAGTTTGACCCTTTCCTGCCAGTCAAAGCAACAGCACACTTCCGGGGAGATTATCAATTTCATTACCGTTGATGCTGAAAGGGTTGGTGATTTCTGTTGGTATCTGCATGATCCTTGGATGGTTGTTCTACAGGTTGCTTTGGCCTTGGCCATTTTGTACAAAAACCTTGGTCTTGCTTCCATCGCAACTCTTGGTGCGACTATAATCGTTATGTTAGCAAATGTTCCCTTGGGAAAGTTGCAAGAGAAGTTTCAGGACAACATAATGAAATCTAAAGATACAAGGATGAAGGTTACATCTGAGATTTTCAGGAACATGAGGATCCTCAAGCTTCAAGGTTGGGAAATGAAATTTCTATCTAAGATTACAGAACTGAGGAAGATTGAGGAGGGATGGTTGAAAAAATATGTCTACACAATGGCCATGACCACATTTGTCTTCTGGGGCGCCCCAACATTCGTATCAGTTGTCACTTTTGGTGCTTGTATGCTTATGGGGATCCCTCTTGAATCCGGGAAAATCTTATCTGCACTTGCAACTTTCAGGATTCTTCAAGAGCCAATTTATAGCCTTCCAGACACGATTTCAATGATAGTTCAAACCAAAGTCTCACTGGACAGAATTTCGTCATTCCTTCGTCATAATGACCTTGAACCAGATGTCATAGAGAAGCTTCCAGTAGGTAGTTCTGACACAGCAATTGAGGTTGTTCATGGGAATTTCTCTTGGGATACATCTTCCTCAACTCCAACACTGCAAGATGTTGATTTCAAAATTCATCATAGCATGCGAGTTGCTGTTTGTGGTACTGTTGGCTCTGGCAAATCGAGCTTGCTCTTCTCTATCTTGGGAGAAGTACCTAAGATATCTGGGGCCCTTAAGGTCTGTGGGACCACAGCCTATGTTGCTCAGTCACCATGGATACAGAGTGGCAAGATTGAGGACAACATATTATTTGGTAAACAGATGGACAGAGAAAGGTACGAGAGGATTCTCGAAGCATGTGCCCTGAAGAAGGACCTTGAAGTTCTCTCATTTGGTGATCAGACAGTAATCGGGGAGAGAGGAATCAACCTGAGCGGCGGACAGAAACAAAGAATACAGATAGCTCGTGCGCTTTACCAGGATGCCGATATCTACTTGTTTGATGATCCTTTTAGTGCAGTCGATGCTCATACAGGATCTCACCTCTTTAAGGAATGTCTTTTCGGCCTTTTGGCTTCAAAAACTGTGATTTATGTTACTCATCAAGTGGAATTTTTACCAGCAGCTGACCTTATCTTGGTCATGAAAGATGGAAAGATTACTCAAGCTGGGAAGTACATTGACATTCTCAGTTCAGGAACTGATTTTATGGCACTTGTTGGGGCACATAAGGAAGCCTTGTCTGCACTTGATTCCATAGAGGATGCAGCTCTATCCGATATATCTTCTATCAGTAAGGAAAATGGATTTACCCTCAGTACTAATGGTGTGGTGCAAGAGGGAGAAAGCAAAGATATTCAAGATGGTGAAGCAGATCCCGGAAAGCCAAATGAGCAGATTATTCAAGAAGAAGAGAGAGAGAAAGGCAGAGTTGGGTTGTCAGTCTACTGGCAGTACCTCACAGCTGCTTATGGAGGAGCACTTGTGCCCTTTATATTGCTTTCCCAGATTCTATTTCAGCTGCTTCAAATTGGAAGCAACTATTGGATGGCATGGGCAACTCCCATTTCAGATGATGTGAAACCTCCTGTTGAAGGGTCTACCCTTATTATCGTCTATGTTGCTTTGGCAGTTGGAAGTTCTTTTTGCATTCTTTCAAGAACAACCCTTCTTGTAACAGCTGGCTATAAGACGGGTACTCTCCTCTTCAATAGAATGCACATGTGTATTTTCCGATCACCCATGTCATTCTTTGATGCCACTCCAAGTGGACGGATACTGAACAGAGCTTCTACAGACCAAAGTGCAGTTGATATGAACATACCCTTTCAAGTTGGATCCCTTGCCTTCACACTCATCCAGCTCTTGGGGATTATTGCAGTAATGTCTCAGGTTGCATGGCAGGTTTTCATTGTTTTTATCCCTGTGATTGCAGCCAGTATCTGGTATCAGCAATATTACATTCCTTCAGCCAGAGAGCTGTCACGTTTAGTAGGAGTATGCAAAGCTCCTGTGATTCAACATTTTTCCGAAACGATTTCTGGATCAACAACAATCAGGAGCTTTGATCAAGAATCAAGATTCAGGGAAACAAATATGAAGCTGATGGATGGCTACTCTCGGCCCAAGTTCAATATTTCTGGTGCTATGGAATGGCTCTGCTTCCGCTTGGATTTGCTTTCTTCCATTACTTTTGTGTTTTCTTTGATTTTCCTCATCTCTATCCCTACGGGGGTTATTGATCCTGGCATTGCTGGCTTAGCTGTGACATACGGACTTAACCTGAACATGTTACAAACTTGGTTTATATGGAACCTCTGCAGTACAGAGAACATAATTATATCTGTGGAGAGGATACTTCAGTATACTTCAATCCCTAGCGAGCCACCACTGATCATAGAGGAAAACCGACCAGATCCTACTTGGCCTTCATCCGGAGAAGTTGAAATCCATGATCTACAGGTACGTTATGCCCCACATATGCCGCTTGTGTTGCGAGGTATCACATGTACTTTTGAGGGGGGTAAGAAATCCGGAATTGTAGGAAGAACTGGGAGCGGTAAATCAACTCTCATACAAACACTTTTCCGAATAGTTGAACCTGCTGCTGGTCAGATTATCATAGATAACACCAACATCTCTTCCATTGGACTGCATGATTTGCGGTCTAGACTGAGCATTATCCCTCAAGATCCAACCATGTTTGAAGGGACAGTACGAAGCAATCTGGACCCACTTGAAGAGTACGCAGATGAACAAATCTGGGAGGCTCTGGATAAATGCCAACTTGGAGATGAAGTCAGGAAGAAAGAAGAAAAGCTTGACTCCACCGTTACCGAGAATGGAGAGAACTGGAGTATGGGTCAGAGGCAGCTGGTATGCCTCGGTAGAGTTCTGCTCAGAAGAAGTAAGATCTTAGTGCTTGATGAAGCCACCGCATCAGTCGACACTGCTACTGATAATCTGATTCAGCAGACATTAAGACATCATTTTTCGAACTGTACCGTCATCGTAATTGCACATCGGATAACTTCTGTGGTTGATAGTGACATGGTTCTACTTCTAAACAATGGGTTGATTGAGGAGTATGATGCTCCTACAAGATTACTAGAAAACAAGTCCTCAGCTTTTGCTCAGCTTGTAGCAGAGTACACTGTTAGGTCCAATTCCATTTTATGA 4500 42.93 MSVLFSRNFSSMYSGIDFLIQPVFLRAFSGSLHLLLLLLLFVSWLFQKYKLGAGDRPKERLKNTTVSCRRLALLCCLAVSLFNLVFCLLSYFYWYTNDWSEENLATLSDLALRALAWAAVSLYLHSHFSVSNESKFPFLLRLWWGFYFSISCYSLVIDFVLDQKHLSLPTQKLVSDAVSFITGLFFLYVGFWGKRQSENTNLEEPLLNGESNTSVSNGIESKKLKGEETVTPFSNAGIFSILTFSWMGPLIALGKKKALDLEDVPQLASTDSVLGSFPQFKNKIEAECGAVSKVTTLTLVKALFYSAWKDILLTALFALLYILSSYVGPYLIDTLVQYLDGRREYENEGYALVSAFFLAKLVECFSQRHWFFRLQLVGIKMRSVLITLIYNKSLTLSCQSKQQHTSGEIINFITVDAERVGDFCWYLHDPWMVVLQVALALAILYKNLGLASIATLGATIIVMLANVPLGKLQEKFQDNIMKSKDTRMKVTSEIFRNMRILKLQGWEMKFLSKITELRKIEEGWLKKYVYTMAMTTFVFWGAPTFVSVVTFGACMLMGIPLESGKILSALATFRILQEPIYSLPDTISMIVQTKVSLDRISSFLRHNDLEPDVIEKLPVGSSDTAIEVVHGNFSWDTSSSTPTLQDVDFKIHHSMRVAVCGTVGSGKSSLLFSILGEVPKISGALKVCGTTAYVAQSPWIQSGKIEDNILFGKQMDRERYERILEACALKKDLEVLSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLFGLLASKTVIYVTHQVEFLPAADLILVMKDGKITQAGKYIDILSSGTDFMALVGAHKEALSALDSIEDAALSDISSISKENGFTLSTNGVVQEGESKDIQDGEADPGKPNEQIIQEEEREKGRVGLSVYWQYLTAAYGGALVPFILLSQILFQLLQIGSNYWMAWATPISDDVKPPVEGSTLIIVYVALAVGSSFCILSRTTLLVTAGYKTGTLLFNRMHMCIFRSPMSFFDATPSGRILNRASTDQSAVDMNIPFQVGSLAFTLIQLLGIIAVMSQVAWQVFIVFIPVIAASIWYQQYYIPSARELSRLVGVCKAPVIQHFSETISGSTTIRSFDQESRFRETNMKLMDGYSRPKFNISGAMEWLCFRLDLLSSITFVFSLIFLISIPTGVIDPGIAGLAVTYGLNLNMLQTWFIWNLCSTENIIISVERILQYTSIPSEPPLIIEENRPDPTWPSSGEVEIHDLQVRYAPHMPLVLRGITCTFEGGKKSGIVGRTGSGKSTLIQTLFRIVEPAAGQIIIDNTNISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYADEQIWEALDKCQLGDEVRKKEEKLDSTVTENGENWSMGQRQLVCLGRVLLRRSKILVLDEATASVDTATDNLIQQTLRHHFSNCTVIVIAHRITSVVDSDMVLLLNNGLIEEYDAPTRLLENKSSAFAQLVAEYTVRSNSIL 1499
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 104129 109726 + Conep09aG0002000.1 Cone9ag0020 444183

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0020 1499 FunFam ABC transporter C family member 5 611 858 - -
Cone9ag0020 1499 CDD ABCC_MRP_domain2 1253 1473 - -
Cone9ag0020 1499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1246 1487 IPR027417 -
Cone9ag0020 1499 Gene3D ABC transporter type 1, transmembrane domain 900 1236 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone9ag0020 1499 Gene3D ABC transporter type 1, transmembrane domain 282 608 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone9ag0020 1499 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1255 1489 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone9ag0020 1499 Gene3D - 610 866 IPR027417 -
Cone9ag0020 1499 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 311 592 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone9ag0020 1499 FunFam ABC transporter C family member 5 900 1236 - -
Cone9ag0020 1499 Gene3D - 1238 1491 IPR027417 -
Cone9ag0020 1499 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 938 1218 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone9ag0020 1499 Pfam ABC transporter transmembrane region 939 1180 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone9ag0020 1499 Pfam ABC transporter transmembrane region 311 579 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone9ag0020 1499 ProSitePatterns ABC transporters family signature. 751 765 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone9ag0020 1499 SUPERFAMILY ABC transporter transmembrane region 936 1237 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone9ag0020 1499 Pfam ABC transporter 644 778 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone9ag0020 1499 CDD ABC_6TM_ABCC_D1 313 600 IPR044746 GO:0140359(InterPro)
Cone9ag0020 1499 SMART AAA_5 653 826 IPR003593 GO:0016887(InterPro)
Cone9ag0020 1499 SMART AAA_5 1281 1466 IPR003593 GO:0016887(InterPro)
Cone9ag0020 1499 CDD ABC_6TM_ABCC_D2 936 1230 IPR044726 GO:0140359(InterPro)
Cone9ag0020 1499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 847 IPR027417 -
Cone9ag0020 1499 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 220 1490 IPR050173 GO:0016020(PANTHER)|GO:0042626(PANTHER)|GO:0055085(PANTHER)
Cone9ag0020 1499 FunFam ABC transporter C family member 10 295 608 - -
Cone9ag0020 1499 FunFam ABC transporter C family member 3 1238 1490 - -
Cone9ag0020 1499 SUPERFAMILY ABC transporter transmembrane region 303 611 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone9ag0020 1499 CDD ABCC_MRP_domain1 626 826 - -
Cone9ag0020 1499 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 626 849 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone9ag0020 1499 Pfam ABC transporter 1272 1420 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0020 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0818 Cone-Chr11:6742815 Cone9ag0020 Cone-Chr9:104129 0 dispersed
Cone12ag0698 Cone-Chr12:6416034 Cone9ag0020 Cone-Chr9:104129 0 dispersed
Cone13ag1123 Cone-Chr13:8964934 Cone9ag0020 Cone-Chr9:104129 9.34E-72 dispersed
Cone18ag0825 Cone-Chr18:5512320 Cone9ag0020 Cone-Chr9:104129 8.29E-217 dispersed
Cone19ag1107 Cone-Chr19:7987859 Cone9ag0020 Cone-Chr9:104129 0 dispersed
Cone1ag0952 Cone-Chr1:54766348 Cone9ag0020 Cone-Chr9:104129 0 dispersed
Cone20ag0944 Cone-Chr20:6775447 Cone9ag0020 Cone-Chr9:104129 0 dispersed
Cone20ag1137 Cone-Chr20:7750376 Cone9ag0020 Cone-Chr9:104129 2.11E-205 dispersed
Cone4ag0456 Cone-Chr4:2027753 Cone9ag0020 Cone-Chr9:104129 1.72E-222 dispersed
Cone5ag0661 Cone-Chr5:2821233 Cone9ag0020 Cone-Chr9:104129 0 dispersed
Cone5ag1554 Cone-Chr5:10801895 Cone9ag0020 Cone-Chr9:104129 8.97E-82 dispersed
Cone7ag0442 Cone-Chr7:1994760 Cone9ag0020 Cone-Chr9:104129 0 dispersed
Cone8ag0725 Cone-Chr8:7296037 Cone9ag0020 Cone-Chr9:104129 4.19E-43 dispersed
Cone8ag0726 Cone-Chr8:7298093 Cone9ag0020 Cone-Chr9:104129 1.47E-32 dispersed
Cone9ag0020 Cone-Chr9:104129 Cone9ag0100 Cone-Chr9:435334 3.66E-29 dispersed
Cone6ag0021 Cone-Chr6:138565 Cone9ag0020 Cone-Chr9:104129 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g626 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0021 Cone9ag0020 . . Lsi02g01854 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002483 1 1 1 1 1 1 2 2 2 1 1 2 2 1 2 2 2 2 2 1 1 3 2 2 3 2 1 3 6 6 59