Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0023 ATGGCACTTGAGTCTTCCATTCTGGGCCCGCTCTCATTGAGTCCAGGCACGAAATCTTTTTCTCTTTTGCATTGCTGCAATCGGCATATGCCTCATCCTGTGAAATTGTTGCAGAGAATTAATGGGTACCCAATTCGTTCTTCATCCAATTGCATTCATTTTCATAATTCTGGAAGCTTTTTGAGCTCGAGACATGAAAGAATTCGCTTTTTGGAAAATAGAGCTTATTTAAGACGTGTAGTTAGTAACGCTGAGACTCTGTGTGAGCAGAATGCTGATTCAGATTCGCGTATAGAGTTCATTAGAGATTTGGTAAAGAGTGGGATACTATTGGCTGCAGTTGTTTGTGGGGTTATGGTGTTTGGGTGTAGAAGGGTTTTTGCAGTAGAAAGTGGAGTCAGTGCCTGTTATGGGGTATCTGGGCAGAGCATGGTGGCGCTTAGGAATGCATGGCCCAAGGTATTACAGGTCCTTTGCGTTTTCAAGGAGCAGGGTTTGATTTTGGCTGCGCTTTTAGGTCTCTCAGCATTTTTCTCCATGGCTGAGACTTCAATTACAACCCTTTGGCCTTGGAAGGTTCGTGAGTTGGCAGAAAAAGAGTCTGAAGAAGGTGTCTTCAGAATGCTTAGCGGTGATATTACACGATTCCTCACAACTATACTTATTGGCACAACTGTGGTAAATATTGGAGCGACTGCACTAGTAACAGAAGCTTCAACAGCAATATTTGGGGAAGCAGGTGTTAGTGCAGCGACTGGAGTAATGACTGTTGCTATTTTGCTCCTTACTGAACTGACTCCGAAAAGTATAGCCGTGCATAATGCAACTGAGGTTGCGAGATTTGTGGTTAGGCCAGTTGCTTGGCTTTCCGTGATATTGTACCCTGTTGGAAGAATTGTCACATATATATCAATGGGGATGCTCAAAATTCTTGGCTTGAAAGGAATAAGTGAACCATATGTGACAGAGGAGGAACTGAAGTTGATTCTGCGAGGTGCCGAGTTAAGTGGGGCTATAGAGGAAGAAGAACAGGATATGATCGAGAATGTGTTAGAGATAAAAGATACCCACGTTAGAGAGGTGATGACACCTCTTGTTGATGTAGTGGCAATAGATGCTAGTGCGACACTTGTAGACTTTCACAGCTTGTGGTTAACCCATCAATATTCAAGAGTACCTGTTTTTGAGCAGCGTGTTGATAATATCGTGGGTATTGCGTATGCAATGGATTTACTAGATTTTGTTCAAAAGGGTGAATTATTAGAAAGCACACCTGTGGGGGATATGGCTCATAAACCTGCTTACTTTGTCCCTGATTCTATGTCGGTCTGGAATCTTCTTAGAGAGTTTCGCATCCGGAAGGTACACATGGCTGTTGTGCTCAACGAATATGGTGGCACTGTTGGATTAGTGACCCTGGAAGATGTCGTGGAGGAAATTGTCGGTGAAATATTTGATGAAAATGATTCGAAGGAGGAAATCCAGAAGAAAACTGGCTACATTGTGATGCGAGCAGAGGGAGTCTATGATGTGGATGCAAACACATCAATCGATCAGCTTTCTGAAGATCTTAACATAAAAATGCCAGAGGGTCACCAGTATGAGACCGTGTCGGGATTTATCTGTGAGGCTTTTGGATACATCCCAAGGACTGGAGAGAGCATTAAAGTAGTCCTTGAGAAGGAAAATGAAGAAGAGAATGATGGGGCCAACTCTGATAACCAGAACCAGAAGGAAAAACATCTGGTTTTTAGACTGGAGATACTAGCTGGAAATGCTAGAAAGGTCAGTGCTGTGCGAATTGAAAAGATAGATGATGAGGCAATGTTAGGGAGCAAAGAAGTGGCACGCTTGGTTCCCAAAATCATGAAGAGGAAATGGAGCAGTGATGAAGACTCGGATGCTGCAGAAAGTGATGAGGATTCATTGGCAAAGAAACCACCTAACGAGATTGCGAGTGAGCATCTAGATGATAATGATAGCACAACTAGCTATTACTTATAA 2004 43.01 MALESSILGPLSLSPGTKSFSLLHCCNRHMPHPVKLLQRINGYPIRSSSNCIHFHNSGSFLSSRHERIRFLENRAYLRRVVSNAETLCEQNADSDSRIEFIRDLVKSGILLAAVVCGVMVFGCRRVFAVESGVSACYGVSGQSMVALRNAWPKVLQVLCVFKEQGLILAALLGLSAFFSMAETSITTLWPWKVRELAEKESEEGVFRMLSGDITRFLTTILIGTTVVNIGATALVTEASTAIFGEAGVSAATGVMTVAILLLTELTPKSIAVHNATEVARFVVRPVAWLSVILYPVGRIVTYISMGMLKILGLKGISEPYVTEEELKLILRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASATLVDFHSLWLTHQYSRVPVFEQRVDNIVGIAYAMDLLDFVQKGELLESTPVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGLVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGVYDVDANTSIDQLSEDLNIKMPEGHQYETVSGFICEAFGYIPRTGESIKVVLEKENEEENDGANSDNQNQKEKHLVFRLEILAGNARKVSAVRIEKIDDEAMLGSKEVARLVPKIMKRKWSSDEDSDAAESDEDSLAKKPPNEIASEHLDDNDSTTSYYL 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 112991 119186 + Conep09aG0002300.1 Cone9ag0023 444186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0023 667 SUPERFAMILY FAD-binding/transporter-associated domain-like 500 607 IPR036318 GO:0050660(InterPro)
Cone9ag0023 667 MobiDBLite consensus disorder prediction 626 667 - -
Cone9ag0023 667 Pfam Transporter associated domain 504 603 IPR005170 -
Cone9ag0023 667 Gene3D - 489 605 IPR016169 -
Cone9ag0023 667 Pfam CBS domain 426 481 IPR000644 -
Cone9ag0023 667 Pfam CBS domain 358 415 IPR000644 -
Cone9ag0023 667 Coils Coil 560 580 - -
Cone9ag0023 667 Pfam Cyclin M transmembrane N-terminal domain 166 343 IPR002550 -
Cone9ag0023 667 ProSiteProfiles CNNM transmembrane domain profile. 157 343 IPR002550 -
Cone9ag0023 667 SMART cbs_1 433 481 IPR000644 -
Cone9ag0023 667 SMART cbs_1 367 416 IPR000644 -
Cone9ag0023 667 FunFam Magnesium/cobalt efflux protein CorC 339 489 - -
Cone9ag0023 667 MobiDBLite consensus disorder prediction 639 657 - -
Cone9ag0023 667 ProSiteProfiles CBS domain profile. 429 487 IPR000644 -
Cone9ag0023 667 SUPERFAMILY CBS-domain pair 345 484 IPR046342 -
Cone9ag0023 667 ProSiteProfiles CBS domain profile. 362 423 IPR000644 -
Cone9ag0023 667 PANTHER HEMOLYSIN-RELATED 141 637 - -
Cone9ag0023 667 Gene3D - 337 488 IPR046342 -
Cone9ag0023 667 CDD CBS_pair_CorC_HlyC_assoc 357 478 IPR044751 -
Cone9ag0023 667 SMART CorC_HlyC_2 502 605 IPR005170 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0023 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0023 Cone-Chr6:152638 Cone9ag0023 Cone-Chr9:112991 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g623 . . Bda07g00396 . . . . . . . Cma01g01088 . Car01g00964 . . . . . . . . . . . . . . . . . . Cone6ag0023 Cone9ag0023 . . . . . . . . . . Bpe11g00574 . . Bma14g00305 . Cmo01g01134 . . . . . . . . . . . . . . Cla09g02052 Cam09g2140 Cec09g2207 . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005841 1 1 2 1 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 2 1 1 2 1 1 38