Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0025 ATGTCTGTTTTCTCTCTCTGCTGCCTTACTCCCATCCTTCACTCTTTCTCTTCCGCTTCCGCTTCTGCTTCTTCCAAGATATTACATCACTCTCAATTCGCATTGGGTTCCAGCTCTCTTTCCTATTTCTATGGGAGTGGAGTTGGCAAGAGGAACAGTTCCTGTCACTTTGTTGTGCTTTCCACGCACTCCAACCCTAAAATTCTCAAGTCCAACCGCAAGTCTAGGTCCGGTAAGGTCTTAACCTCGTTTGACAGTGATGAAGATGACGAGGAGGAGGAGGACGACGACGACGACGAAGATGATTGGTGGGATGAGGATGAATTTGCAGAACCTGCTGAATTCGATGCCAAAAGAAAGAGGTCCAAGTCGAATAAGGGGGTTGGCAGCAGTGACAAACAGCAAGGGAACAAGAGGCAACCAACCAAAAGCCAGGATACAATATCTTTGAACTTTGGACAAAGCCTTAACACCGATGAGGACTATTTTGATGTCCAAGATGCTAGAAATGCCTCATTTAAGAAAAACTATAACTCCAACAAGGAGGAAGGAAGTTCCTTGGGCATAAATGGCAGAGCAAAGATGACCAAGAAAGCAATGGCAGTGAGATTTCCCCTTCTAGCTGAAGAAATAGATGTGGATGAGAAATGGTTCCCCCTTCTTGATTATCTCACTACATTTGGGCTAAAGGAATATCACTTTATCCAGATGTATGAGAGGCACATGCCTTCCCTTCAAATAAATGTCTGTTCTGCGCGGGAGAGGCTTGAATACTTATTAAGTGTTGGGGTCAAACAGAGAGATATCAGAAAAATACTTTTGAGGCAGCCTCAGATTCTCGAGTATACTGTGGAGAACAATTTGAGGTCTCATGTTGCTTTCTTACTGAGTTTGGGTATAAAAAATTCCAGGGTAGGACAGATAATTGCTGCTTCTCCGTCCCTTCTCTCATATAGTGTTGAGAATTCACTAAAACCCACTGTAAGGTACTTGGTTGAGGAGGTAGGAATTAAGGAGAAAGATTTAGGCAAAGTTGTGCAGCTAAGTCCACAAATCCTGGTTCAGCGGATTGACATTTCATGGAATACTAGATATATGTTTCTTTCAAAGGAATTGGGTGCTCCAAGAGAGAGTATAGTAAAGATGGTAAAAAAGCATCCGCAACTTCTACACTATAGCATTGATGATGGGTTACTACCCAGGATCAATTTTCTAAGGAGTATTGGAATGCATAATGCCGACATCTTGAAAGTTTTGACAAGCCTGACCCAGGTACTATCTTTATCCTTGGAAGAAAATTTAAAGCCCAAGTATATATATTTGGTTGATGAGCTGCATAATGAGGTTCAATCATTGACCAAGTATCCTATGTACCTAAGCTTGTCATTAGACCAAAGAATTCGACCCCGACACAGATTCCTGGTTGCTCTAAAGAAAGCTCCCAAGGGGCCATTCCCTCTAAGTTCACTGGTTCCAACAGATGAATGCTTTTGTCAGCAGTGGGCTGGAACTAGCTTAGATAAGTATTTGGCATTTCGGCAGAGATTATTATTAAAGGAGTTTGCAAAGAAATATGAAAGGAAAGGATAG 1590 42.14 MSVFSLCCLTPILHSFSSASASASSKILHHSQFALGSSSLSYFYGSGVGKRNSSCHFVVLSTHSNPKILKSNRKSRSGKVLTSFDSDEDDEEEEDDDDDEDDWWDEDEFAEPAEFDAKRKRSKSNKGVGSSDKQQGNKRQPTKSQDTISLNFGQSLNTDEDYFDVQDARNASFKKNYNSNKEEGSSLGINGRAKMTKKAMAVRFPLLAEEIDVDEKWFPLLDYLTTFGLKEYHFIQMYERHMPSLQINVCSARERLEYLLSVGVKQRDIRKILLRQPQILEYTVENNLRSHVAFLLSLGIKNSRVGQIIAASPSLLSYSVENSLKPTVRYLVEEVGIKEKDLGKVVQLSPQILVQRIDISWNTRYMFLSKELGAPRESIVKMVKKHPQLLHYSIDDGLLPRINFLRSIGMHNADILKVLTSLTQVLSLSLEENLKPKYIYLVDELHNEVQSLTKYPMYLSLSLDQRIRPRHRFLVALKKAPKGPFPLSSLVPTDECFCQQWAGTSLDKYLAFRQRLLLKEFAKKYERKG 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 125158 127955 - Conep09aG0002500.1 Cone9ag0025 444188

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0025 529 MobiDBLite consensus disorder prediction 85 111 - -
Cone9ag0025 529 Pfam mTERF 201 477 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone9ag0025 529 MobiDBLite consensus disorder prediction 112 127 - -
Cone9ag0025 529 SMART mt_12 306 338 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone9ag0025 529 SMART mt_12 343 375 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone9ag0025 529 SMART mt_12 416 448 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone9ag0025 529 SMART mt_12 270 301 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone9ag0025 529 SMART mt_12 449 481 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone9ag0025 529 SMART mt_12 380 411 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)
Cone9ag0025 529 FunFam Transcription termination factor MTERF9, chloroplastic 281 516 - -
Cone9ag0025 529 MobiDBLite consensus disorder prediction 128 149 - -
Cone9ag0025 529 Gene3D Transcription termination factor 3, mitochondrial 279 516 IPR038538 -
Cone9ag0025 529 MobiDBLite consensus disorder prediction 79 149 - -
Cone9ag0025 529 PANTHER CGI-12 PROTEIN-RELATED 186 500 IPR003690 GO:0003690(InterPro)|GO:0006355(InterPro)|GO:0032502(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0025 K15031 - - mdm:103448334 650.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0026 Cone-Chr6:169433 Cone9ag0025 Cone-Chr9:125158 5.51E-227 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g617 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0026 Cone9ag0025 . . . . . . . . . . . . Bma07g01269 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g00946
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002407 4 3 3 3 1 1 2 1 2 2 1 1 2 2 2 1 1 4 2 2 1 1 0 2 2 1 2 5 2 2 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46761 PF01095 Pectinesterase 1.60E-53 CL0268 Cone TR