Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0026 ATGGCCGTTTTTCCAGATGATTTGAGTCTATCTTCTCCCAAGCAGATGGCAACTTCTGGGGCTAGTGCTTCTGTTAAAGTAGATTCTGTTGAATTTAATCCGAGAGGGCCAATGAATGTAATAGGTAGTGGGATTTCTGTAATGGCTGAAAAGTCGTCTGATGATGGATATAACTGGCGAAAATATGGACAGAAACTTGTTAAGGGAAGTGAATTCCCACGCAGCTATTACAAGTGTACCCATCCTAACTGTGAAGTTAAAAAACTATTTGAACGTTCTCATGATGGACAGATAACCGAGATTATATACAAGGGTACTCATGATCATCCTAAACCGCAACTCAATAGGCGATATAGTGGCGGTGCCATGATTTCTATCCAGGAGGAGAAAGCTGACAAGCCTCTGTATTTGAACTGCCAAGATGACAAGTCAGCTGCCAGATATGGTCAAATTTCTGAGGCCATGGAGTCAAATTGTACTCATGATCGAGCCCCAGTTACATTGAAAGATGATAATGTAGAAGGTACGGGATCACTGCTAAATAAGAGTAATGATGATGTTGATGATGACGATCCATTCTCAAAGCGGAGGAAAATGGATGTTGGTGGGTTCGACGTTGCTCCATTGGTTAAGCCCATCAGGGAACCTCGTGTTGTTGTGCAAACCCTAAGTGAGGTTGATATATTGGATGATGGGTACCGTTGGCGCAAATATGGCCAGAAAGTAGTCAGAGGAAATCCCAATCCAAGGAGTTATTACAAGTGCACAAATGCTGGATGCCCCGTCAGAAAACATGTAGAAAGGGCGTGCCATGACCCGAAAGCTGTCATAACGACATATGAAGGAAAACATAATCATGATGTCCCTACTGCGAAATCTAGTAGCAGCCACGACACACCAGGCCTGATGACAATGGGTGGGCCATCAAGGTTCAGATTGGATGAAAATGAAGATGTGAGTCTTGATCTCGGGGTGGGTATTAACGCAGCTACTGAGAATAGATCCAACTGTTACAGCCAAACCCAAAATAACCGATCAAACTTTAAGGCAGTTGAAGGTATGCCAGCACCGACATATTTTGGGGTTGTAAATAGAGGAGGCATAAACCAGTTTGGATCGAGAGAAAATATGAGTGATGGCCGGAGCATTGACGTAGCACCGGTAAACCATTCTTCTTACCAATACTCACAGAACATGGGAAGAATACTAACAGGTCCATAG 1221 43.49 MAVFPDDLSLSSPKQMATSGASASVKVDSVEFNPRGPMNVIGSGISVMAEKSSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQITEIIYKGTHDHPKPQLNRRYSGGAMISIQEEKADKPLYLNCQDDKSAARYGQISEAMESNCTHDRAPVTLKDDNVEGTGSLLNKSNDDVDDDDPFSKRRKMDVGGFDVAPLVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERACHDPKAVITTYEGKHNHDVPTAKSSSSHDTPGLMTMGGPSRFRLDENEDVSLDLGVGINAATENRSNCYSQTQNNRSNFKAVEGMPAPTYFGVVNRGGINQFGSRENMSDGRSIDVAPVNHSSYQYSQNMGRILTGP 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 128238 132403 - Conep09aG0002600.1 Cone9ag0026 444189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0026 406 Pfam WRKY DNA -binding domain 230 287 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0026 406 Pfam WRKY DNA -binding domain 54 110 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0026 406 Gene3D WRKY domain 214 290 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0026 406 Gene3D WRKY domain 45 113 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0026 406 FunFam WRKY transcription factor 33 216 282 - -
Cone9ag0026 406 MobiDBLite consensus disorder prediction 11 25 - -
Cone9ag0026 406 FunFam WRKY transcription factor 44 113 - -
Cone9ag0026 406 SMART WRKY_cls 229 288 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0026 406 SMART WRKY_cls 53 111 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0026 406 ProSiteProfiles WRKY domain profile. 48 112 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0026 406 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 31 320 IPR044810 GO:0003700(InterPro)
Cone9ag0026 406 SUPERFAMILY WRKY DNA-binding domain 221 289 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0026 406 MobiDBLite consensus disorder prediction 167 194 - -
Cone9ag0026 406 ProSiteProfiles WRKY domain profile. 224 289 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0026 406 SUPERFAMILY WRKY DNA-binding domain 50 112 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone9ag0026 406 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0075 Cone-Chr4:366501 Cone9ag0026 Cone-Chr9:128238 4.38E-80 dispersed
Cone7ag0070 Cone-Chr7:297307 Cone9ag0026 Cone-Chr9:128238 3.53E-80 dispersed
Cone7ag0493 Cone-Chr7:2269946 Cone9ag0026 Cone-Chr9:128238 5.92E-77 dispersed
Cone7ag0569 Cone-Chr7:2732336 Cone9ag0026 Cone-Chr9:128238 1.74E-45 dispersed
Cone8ag1387 Cone-Chr8:10979428 Cone9ag0026 Cone-Chr9:128238 1.15E-70 dispersed
Cone9ag0026 Cone-Chr9:128238 Cone9ag1265 Cone-Chr9:9395529 8.43E-28 dispersed
Cone14ag1206 Cone-Chr14:9812542 Cone9ag0026 Cone-Chr9:128238 6.79E-132 wgd
Cone15ag1223 Cone-Chr15:9724224 Cone9ag0026 Cone-Chr9:128238 1.07E-34 wgd
Cone6ag0027 Cone-Chr6:172101 Cone9ag0026 Cone-Chr9:128238 1.65E-274 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46762 PF00338 Ribosomal_S10 2.00E-32 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0026 - - - 0.0