Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0029 ATGGAATCGGATCTAGGCAAGCTCTTCATTGGTGGGATTGCTTGGGACACCGATGAAGAACGTCTCAAAGAATATTTTAGTAAATATGGAGAGGTGATTGAGGCTGTGATCATGAGAGATCGAACCACAGGTCGGGCCCGTGGGTTTGGTTTCATTGTCTTGGCAGACCCTACTGTTGCTGAAAGGGTCATCTTGGAGAAGCACATGATTGATGGCCGCATTGTTGAAGCAAAGAAGGCCGTTCCTAAGGATGATCAACAAATTTTGATCAAGAGTACTAACAACATTCAGGGTTCTCCAGGTCCTGGTCGCTCCAGAAAGATTTTCGTGGGAGGCTTAGCATCAGCAGTAACAGAGGGAGACTTCAAGAAGTACTTTGATCAGTTTGGAACTGTCACTGATGTTGTCGTGATGTATGATCATAACACTCAAAGGCCGAGGGGGTTTGGCTTCATAACTTATGATTCTGAGGAGGCGGTTGATAGGGTTCTACATAAGACATTTCATGAACTCAATGGTAAGATGGTTGAGGTCAAGAGGGCGGTCCCTAAAGAGTTATCTCCAGGGCCCAGCCGGAGCCCGTTAGTAGGCTATAACTACGGTTTGAGTAGGACTTCTAGCTTCCCTAATAATTATGCTCAAGGTTATAATATGAGCCCACTTGGAGGTTATGGAGTCAGAATGGCTGGTCGGTTCAGCCCGTTAGCTGGTGGCCGGAGTGGTTTTAATCCTTTTGGAAATGCCACTTTTGGGATAGGTGTAAATTTGGAAGGCGGGTTGAGTCCAAGTTATGGCCGGAATTCCAACTTTGGCAATAATGTAGGTTATGCCCAGATGTTGAGTCCTTATTTTAGTGGAAATTCGAACAGATATACAACTCCTATTGGCTATAGTGGAGGCAATGGAAGAAGTGATTCTCTATTAAGCTCATCAACTCGGAACAGTGTTTGGAGCAATGCGGGCCTTAACGGTGTCACAAACCTATCTGGCCCAGGATCTTATTTGGGATCAGGCAATGGGAGTTTTGGAGTGTCGATTGGAAATAACGGAGCGAGTTGGAGTCCTTCTCAGGTTTCAAACCAGGGGAGAGGGAATGCTTCTGGCTATACTATTGCTAGTATTGGTTATGGGAGTGGAGATAATTACTTTGGACTGGGTGGAGGGTATGGAAGAAACAGTGGGTCTTCTGCTGCCCCAACATCTTCAGTTGCTGCAACAAGTGGTGGTTATGAAGGGTCCTATGGGGACCTGTACCGTAGTAGTTCGGTTTATGGTGATTCGACATGGCGGTCAACCACTCCCGAGCTAAATGGGTCTGGCTCCTTTGGTTATGGTCTTGATGACATTGCATCAGATGTTACAGCAAAAAGTTCTGAGGGTTATATTGGAAGCTACAATTCAAATAGACAAGCAAATAGAGGAATTGCTGCGTAG 1434 45.75 MESDLGKLFIGGIAWDTDEERLKEYFSKYGEVIEAVIMRDRTTGRARGFGFIVLADPTVAERVILEKHMIDGRIVEAKKAVPKDDQQILIKSTNNIQGSPGPGRSRKIFVGGLASAVTEGDFKKYFDQFGTVTDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLHKTFHELNGKMVEVKRAVPKELSPGPSRSPLVGYNYGLSRTSSFPNNYAQGYNMSPLGGYGVRMAGRFSPLAGGRSGFNPFGNATFGIGVNLEGGLSPSYGRNSNFGNNVGYAQMLSPYFSGNSNRYTTPIGYSGGNGRSDSLLSSSTRNSVWSNAGLNGVTNLSGPGSYLGSGNGSFGVSIGNNGASWSPSQVSNQGRGNASGYTIASIGYGSGDNYFGLGGGYGRNSGSSAAPTSSVAATSGGYEGSYGDLYRSSSVYGDSTWRSTTPELNGSGSFGYGLDDIASDVTAKSSEGYIGSYNSNRQANRGIAA 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 139349 143098 + Conep09aG0002900.1 Cone9ag0029 444192

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0029 477 Pfam RNA recognition motif 8 66 IPR000504 GO:0003723(InterPro)
Cone9ag0029 477 Pfam RNA recognition motif 108 165 IPR000504 GO:0003723(InterPro)
Cone9ag0029 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723(InterPro)
Cone9ag0029 477 Gene3D - 6 88 IPR012677 -
Cone9ag0029 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723(InterPro)
Cone9ag0029 477 CDD RRM2_Hrp1p 107 184 - -
Cone9ag0029 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 394 - GO:0003729(PANTHER)|GO:0006417(PANTHER)
Cone9ag0029 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Cone9ag0029 477 SMART rrm1_1 7 78 IPR000504 GO:0003723(InterPro)
Cone9ag0029 477 SMART rrm1_1 107 179 IPR000504 GO:0003723(InterPro)
Cone9ag0029 477 SUPERFAMILY RNA-binding domain, RBD 97 201 IPR035979 GO:0003676(InterPro)
Cone9ag0029 477 Gene3D - 103 189 IPR012677 -
Cone9ag0029 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Cone9ag0029 477 SUPERFAMILY RNA-binding domain, RBD 4 105 IPR035979 GO:0003676(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0029 K14411 - - rcu:8277575 705.286
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone3ag1296 Cone-Chr3:31825771 Cone9ag0029 Cone-Chr9:139349 4.93E-186 dispersed
Cone5ag1818 Cone-Chr5:12841381 Cone9ag0029 Cone-Chr9:139349 8.55E-137 dispersed
Cone7ag0342 Cone-Chr7:1492843 Cone9ag0029 Cone-Chr9:139349 1.02E-72 dispersed
Cone7ag1318 Cone-Chr7:9666753 Cone9ag0029 Cone-Chr9:139349 2.63E-56 dispersed
Cone9ag0029 Cone-Chr9:139349 Cone9ag1326 Cone-Chr9:9959975 5.23E-34 dispersed
Cone14ag1200 Cone-Chr14:9754714 Cone9ag0029 Cone-Chr9:139349 4.57E-195 wgd
Cone15ag1220 Cone-Chr15:9698256 Cone9ag0029 Cone-Chr9:139349 4.85E-194 wgd
Cone6ag0030 Cone-Chr6:185853 Cone9ag0029 Cone-Chr9:139349 1.16e-317 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g609 . . . . Bpe09g00137 . Bma10g00587 Bma13g01106 Cmo16g00980 Cmo06g00879 . . . . . . . . . . . . . . Cla10g00435 Cam10g0434 Cec10g0456 Cco10g0445 Clacu10g0442 Cmu10g1273 Cre10g0689 Cone6ag0030 Cone9ag0029 Cone14ag1200 Cone15ag1220 . Csa03g00443 . Cme06g02800 Blo07g00874 . Bda05g00687 Bda12g00948 . Bpe03g00761 . . . . . . Cma16g00941 . Car16g00905 Cpe14g00765 . Bhi11g00503 Tan01g1803 . . . . . . . . . . . . Lsi05g00527 . Chy06g01874 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003655 1 5 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 1 1 1 1 1 1 1 1 0 4 3 2 46