Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0038 ATGGATATTGGCATGAGCTCTCCAAATATTGATCGTGCTTTTTATTTGACATTCTTGTTCATTTTCATAATCGGCAAGGTCCAGTCCTATGAAAATGTTTTCAATGTGTTACACTATGGCGCCTTTCCTGGTGTGTCACATGACAACAGTCAGGCACTTAGTAATGCCTGGAATGAAGCTTGTCAAAGTGAAGGACAGAACGTGGTTCTGGTCCCGCTCGGAGACTACTTGGTACGTCCAGTGGTACTCAAGGGCCCGTGTAAAGGTTTGACAGAGTTTCGGCTTTTGGGGATCTTAAGAGCAGCTACTGATGAATCATCATCGCTTGACTATAATCATTGGATCAGCTTCCAATACGTAGATAACTTTGTACTTGGTGGAGGTGGGGCACTTGATGGGCAAGGCCCCTCTGCTTGGCACTACAACAATTGCTCTAAGAACATTTCAGATTGCAAGCCGCTTCCTGTTTCGTTGAATCTCGATTTCATCACCAACGCGTGGATTAATCACATAAAATTGATCAACAGCAAGAATTTTCATATGAGCATATTCCAATGCAATCATATGGTTTTGGAGAATCTTGGAATATTGGCACCAGGAGATAGTCCAAACACGGACGGAATTCACATCGCGGAATCAACCGACATTAATATCCGTAACTCAATCATTGGTGTTGGAGATGACTGCATCTCCATGGGTCCAGGTTGCAGCGGAATAAACATTTCGTTTGTTCAATGTGGTCCTGGCCATGGATTCAGCATCGGAAGCCTTGGAAAAACACCTAATGAACACAATGTAGATGGAGTAGTCATAAGCAATAGCAGAATTATTGGTACTCAAAATGGGTTAAGGATCAAAACATGGTCTCCTTCTACTCCAAGCTCGGTTTCCAATGTCACCTTCGAACACATTAGGTTGGTCGATGTTGAAAATCCTATTATCATCGACCAGCTCTATTGCCCGAATAGTTATTGTGGTGAAAAGAGCTACTCGGGAGTTGGGATCGAAGATGTGAAGTATATAAATATATGGGGCACTTCAAAATCAAAAGTTGCAGTGGATTTCAAATGCAGCGAGAAGGTTCCTTGCCAGAAAATAGAACTTGATGATATATAA 1116 42.29 MDIGMSSPNIDRAFYLTFLFIFIIGKVQSYENVFNVLHYGAFPGVSHDNSQALSNAWNEACQSEGQNVVLVPLGDYLVRPVVLKGPCKGLTEFRLLGILRAATDESSSLDYNHWISFQYVDNFVLGGGGALDGQGPSAWHYNNCSKNISDCKPLPVSLNLDFITNAWINHIKLINSKNFHMSIFQCNHMVLENLGILAPGDSPNTDGIHIAESTDINIRNSIIGVGDDCISMGPGCSGINISFVQCGPGHGFSIGSLGKTPNEHNVDGVVISNSRIIGTQNGLRIKTWSPSTPSSVSNVTFEHIRLVDVENPIIIDQLYCPNSYCGEKSYSGVGIEDVKYINIWGTSKSKVAVDFKCSEKVPCQKIELDDI 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 160918 162320 - Conep09aG0003800.1 Cone9ag0038 444201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0038 371 FunFam Pectin lyase-like superfamily protein 24 371 - -
Cone9ag0038 371 Gene3D - 25 371 IPR012334 -
Cone9ag0038 371 PANTHER - 34 371 - -
Cone9ag0038 371 Pfam Glycosyl hydrolases family 28 61 371 IPR000743 GO:0004650(InterPro)|GO:0005975(InterPro)
Cone9ag0038 371 SMART pbh1 296 317 IPR006626 -
Cone9ag0038 371 SMART pbh1 213 234 IPR006626 -
Cone9ag0038 371 SMART pbh1 186 212 IPR006626 -
Cone9ag0038 371 SMART pbh1 266 287 IPR006626 -
Cone9ag0038 371 SUPERFAMILY Pectin lyase-like 18 371 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0908 Cone-Chr14:7303933 Cone9ag0038 Cone-Chr9:160918 5.81E-182 dispersed
Cone9ag0038 Cone-Chr9:160918 Cone8ag1394 Cone-Chr8:11000287 5.23E-106 transposed
Cone9ag0038 Cone-Chr9:160918 Cone15ag0917 Cone-Chr15:7240908 2.87E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0038 K01213 - mdm:114819200 357.451