Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0039 ATGTGTACCTCATGCGCTTCCTTTATTCTTCTGGCTCTACTCCTTCACTCTGTACTGGCTTTAGTCTCAGCTCAGGGATCTAAATCTAATACCACTGCTCTCTGGCAGACTCTAAGCGGAGATCCTCCTTTTGTTGTGGCACGTGGGGGGTTCTCAGGGCTGTTTCCCGATTCCAGTTTAATTGCATACAATTTCGCATTGGTTGTCAGCGTGCCTGATTTGATCTTGTGGTGTGATGTGCAATTAACAAAGGATGGAGCTGGAATTTGCCTTCCAGATCTGAAGATGGATAATTCTACTAACATCGGAAATGTTTTCAATAAAGAGGAGAAAATGTATCTCGTTAATGGTGTTCCTACAAAAGGATGGTTTTCTGTGGATTACACTCTGAAACAGCTCGGCAGCGTTTTCCTGAATCAAGGTGTCTATTCCCGAGCAAATAACTTTGATGGCAGTTCCTTCCCAATTCTCACTGTTCAAGATGTTGCTGCTCTCAAGCCACCCGGTCTGTGGTTGAATTTCCAGCATGATGCTTTCTACACACAGCACAATTTGAGTATGAGAAGCTTTGTACTTTCTGTATCGAGAAGTGTTATTGTCAGTTATGTATCATCACCAGAAGTTGCTTTTCTTAGAAGTGTTGAAGCAAGATTTCGTCCAAGCACGACAAAACTTGTATTTCGATTTTTAGGACAAGATGCTTTGGAGCCTACAACAAATCAGACTTATGGTTCCCTCTTGAAAAATCTTACATTTATCAAGACCTTCGCTTCCGGAATTCTTGTTCCCAAGTCTTACATATGGCCTGTGGATAGTAGTTATTTACTACCTCATACGTCTCTAGTCCCAGATGCTCATAAATTAGGCTTCGAAGTTTTTGCATCAGAGTTCTACAATGACGTTCCACTTAGCTACAATTACAGTTATGATCCAGTTTCTGAGTATTTGGGTTACATTGACAATGGAGAATTTTCAGTTGATGGTGTGCTCTCGGATTTCCCAATAACACCATCAGAAGCCATTGATTGCTTTGCTCATCTCAGTAAAAATGACAAACCCCAAGCAACGCCTTTGGTTATCTCAAAATGTGGAGCTAGTGGAGACTATCCGGGTTGTACTGATTTGGCTTATGGCAAGGCTATATTAGACGGTGTGGATGTACTTGACTGTCCAGTTCAAATGGCACAGGACGGGATACCATTCTGCTTAAGCTCCATAAATCTTATTAATAGTACAACTGTAGTTCAAACAACTTTCAACAACCTTACCAAAGAAATTCCAGCAATTAATACTGGTACTGGAATCTTTGCCTTTGACCTGACATGGCCTCAGATTCAAAGTTTGACTCCGGCAATAGCAAACCCTTTCTCAGGGTTCACATTGTATCGAAACCCCAAGTTCAAAAACAGTGGAACTTTTCTCACATTGTCTGATTTCTTGTCCTTGGCCAAGAATACAAGCAGTCTTTCTGGTGTGCTGATCAAGATAGAGCATGTAGCCTATCTCGCTGAGGAGCAGGACTTAAGTGTAATTGATGCTGTCCTGTCTGTCCTGAGTAAGTCTGGCTATGACAATCAGACAACCCAGAAAGTTATGATTCAATCTACAAACAGCTCTGTTTTAACAAAATTCAAAGGGAAAAGCAATTATCATCTTGTATACGAGGTTGACGAGACTATTCGAGACGCACTTAATTCGACTATTTTGGACATAAAGAGTTTTGCCAGTGCTGTGGTAGTCGGCAAGTCCTCGGTCTTTTCCTTAAGATCAGCATTTCTCACACGGCTTACAGATGTTGTATCAAAGTTCCAATCATTCAAGCTCCCTGTTTATGTAGAAACCTTTAGTAACGAATTTGTGTCTCAAGCGTGGGATTTCCTCTCTGATGCAACTGTGGAGATTAATTCATATGTAGCGGGTGCCAACATTGATGGTGTCATCACAGACTACCCTAAAACAGCTGCTAGATACAGAAAGAATCGGTGTCTAAATTTGGGAAACAATACACCTTCTTACATGAGCCCTGTTCAGCCTGGTGGTTTGCTGTCATTGATTGAAGGTCCTTACCTCCCACCAGCTGAAGCTCCGATTCCAGCATTAACTGATTTGGACGTGGCTGAAGCGCCTTTGCCCCCTCTCTCTGGCAAATCCCCCACAAATTCGACAGATGGTGTATCTACAGCTCCGACTTCAACACCAACAAATGGCCAGCCCAAGATTACCACATGGTTTTTCCTCTCAAATCTGGCTATGCTTCTTTCTGCTCTATTTCTTCTGTCTTGA 2283 42.18 MCTSCASFILLALLLHSVLALVSAQGSKSNTTALWQTLSGDPPFVVARGGFSGLFPDSSLIAYNFALVVSVPDLILWCDVQLTKDGAGICLPDLKMDNSTNIGNVFNKEEKMYLVNGVPTKGWFSVDYTLKQLGSVFLNQGVYSRANNFDGSSFPILTVQDVAALKPPGLWLNFQHDAFYTQHNLSMRSFVLSVSRSVIVSYVSSPEVAFLRSVEARFRPSTTKLVFRFLGQDALEPTTNQTYGSLLKNLTFIKTFASGILVPKSYIWPVDSSYLLPHTSLVPDAHKLGFEVFASEFYNDVPLSYNYSYDPVSEYLGYIDNGEFSVDGVLSDFPITPSEAIDCFAHLSKNDKPQATPLVISKCGASGDYPGCTDLAYGKAILDGVDVLDCPVQMAQDGIPFCLSSINLINSTTVVQTTFNNLTKEIPAINTGTGIFAFDLTWPQIQSLTPAIANPFSGFTLYRNPKFKNSGTFLTLSDFLSLAKNTSSLSGVLIKIEHVAYLAEEQDLSVIDAVLSVLSKSGYDNQTTQKVMIQSTNSSVLTKFKGKSNYHLVYEVDETIRDALNSTILDIKSFASAVVVGKSSVFSLRSAFLTRLTDVVSKFQSFKLPVYVETFSNEFVSQAWDFLSDATVEINSYVAGANIDGVITDYPKTAARYRKNRCLNLGNNTPSYMSPVQPGGLLSLIEGPYLPPAEAPIPALTDLDVAEAPLPPLSGKSPTNSTDGVSTAPTSTPTNGQPKITTWFFLSNLAMLLSALFLLS 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 167576 172214 - Conep09aG0003900.1 Cone9ag0039 444202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0039 760 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 41 340 - -
Cone9ag0039 760 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 355 658 - -
Cone9ag0039 760 Gene3D Phosphatidylinositol (PI) phosphodiesterase 355 658 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Cone9ag0039 760 Gene3D Phosphatidylinositol (PI) phosphodiesterase 42 340 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Cone9ag0039 760 SUPERFAMILY PLC-like phosphodiesterases 42 340 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Cone9ag0039 760 ProSiteProfiles GP-PDE domain profile. 43 341 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Cone9ag0039 760 CDD GDPD_SHV3_repeat_1 43 340 - -
Cone9ag0039 760 CDD GDPD_SHV3_repeat_2 357 657 - -
Cone9ag0039 760 MobiDBLite consensus disorder prediction 714 734 - -
Cone9ag0039 760 Pfam Glycerophosphoryl diester phosphodiesterase family 364 653 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Cone9ag0039 760 SUPERFAMILY PLC-like phosphodiesterases 357 658 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Cone9ag0039 760 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 6 740 - GO:0008889(PANTHER)
Cone9ag0039 760 ProSiteProfiles GP-PDE domain profile. 357 658 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Cone9ag0039 760 MobiDBLite consensus disorder prediction 708 734 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag0607 Cone-Chr4:2796663 Cone9ag0039 Cone-Chr9:167576 6.36E-209 dispersed
Cone7ag0583 Cone-Chr7:2797196 Cone9ag0039 Cone-Chr9:167576 2.74E-191 dispersed
Cone14ag1192 Cone-Chr14:9726814 Cone9ag0039 Cone-Chr9:167576 0 wgd
Cone15ag1212 Cone-Chr15:9632991 Cone9ag0039 Cone-Chr9:167576 0 wgd
Cone6ag0036 Cone-Chr6:216015 Cone9ag0039 Cone-Chr9:167576 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0039 - - - 0.0