Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone9ag0040 | ATGATGGGGATGTTGTCTACAGTCACAAACTTAGGGGGAGACCATGAATTAGTGATTCCTATCACCTTCTTCGTCGCGGTTCTGTGTCTCTGCTTAGTCATCGGCCACTTGCTCGAGGAAAGTCGTTGGATCAACGAGTCCATTACTGCCATTCTCATCGGGTGCATAACTGGAGCTATACTCTTGTTTGCTACCAAAAGGAAAAGCTCTCGCATCCTGACCTTTAACGAAGAGCTCTTCTTTATATATCTCCTTCCTCCCATTATATTCAATGCTGGATTTCAAGTGAAAAAGAAACAGTTCTTCCGTAACTTCTTAACCATCATGCTCTTCGGCGTGATTGGTGTTTTCATCTCTGTGTTCATCATCACGGCCGGCAGCTGGTCCCTGTTTCCTAAGCTTGGGTTTCTCGGATTGACGGCACGAGACTATTTCGCTGTAGGAACGATATTTTCGTCCACTGATACAGTGTGCACACTGCAGGTTCTCCAACAGGATGAAACTCCTTTGCTATACAGCCTTGTCTTTGGGGAAGGAGTCGTAAATGATGCCACTTCAGTTGTCCTCTTCAATGCTGTTCAGAAGATTGACGTCAGTAGGCTTAATTGCCACACAATCCTTCGTGTTCTTGGAGACTGTTTTTACCTTTTCTTCACGAGCACTTGTCTTGGAGTCGTTTCGGGACTTGTCGTGGCATTTATACTCAAAACCTTATACTTTAGACGACACTCAAGTGTCCGGGAATTGGCTATAATGGTGTTAATGGCTTATCTGTCCTACATGTTGGCCGAGTTGTTCGAGTTAAGCGGAATCCTAACGGTTTTCTTTTGCGGGATTATAATGTCCCACTATGCATGGCACAATGTGACTGAGAGTTCAAGGATCACAACAAGGCATGTATTTGCAATGCTGTCATTTGTTGCAGAAACATTCATATTTCTTTACGTGGGAATGGATGCTCTTGACATTGAGAAATGGAAGATAACCAAGTTAAGTTTTGGGGAATCTGTGGGTATCTATAGTTCCATTATCTTCTTAATATTGCTAGGACGTGCGGCTTTTGTGTTTCCGCTCTCTGCTTTGTCCAATTTCTTTAATAGACATATTGAGAGACGACATCTGATCTCATTTAAGCATCAGATAGTGATCTGGTGGGCTGGGCTTATGAGAGGAGCTGTCTCCATTGCTTTGGCTTTCAAACAGTTCACATATTCTGGTGTTACTATGGATCCAATTAATGCTACAATGATTACCAACACCATCATTGTTGTTCTCTTCAGCACAGTGGTGTTTGGCTTCCTGACAAAGCCACTTGTAAGCTACCTCCTTCCCCATAACACCACAAAGGATGCAGAAAAACGAGAAGTGAAGTCACCCGGGGAGGATGTAACACTCCCTCTGCTTTCCATGGAAGAGTCTGTGACTGCCAATATCATCCGAGCAAAAGATAGTTTGTCGATGCTAATAGAGAGGCCGGTATATACCATACATTCCTATTGGAGGAGATTTGATGATAATTACATGAGACCCATATTTGGGGGACCCACGTCTACGGATCGATCTGCATGCTAG | 1572 | 43.7 | MMGMLSTVTNLGGDHELVIPITFFVAVLCLCLVIGHLLEESRWINESITAILIGCITGAILLFATKRKSSRILTFNEELFFIYLLPPIIFNAGFQVKKKQFFRNFLTIMLFGVIGVFISVFIITAGSWSLFPKLGFLGLTARDYFAVGTIFSSTDTVCTLQVLQQDETPLLYSLVFGEGVVNDATSVVLFNAVQKIDVSRLNCHTILRVLGDCFYLFFTSTCLGVVSGLVVAFILKTLYFRRHSSVRELAIMVLMAYLSYMLAELFELSGILTVFFCGIIMSHYAWHNVTESSRITTRHVFAMLSFVAETFIFLYVGMDALDIEKWKITKLSFGESVGIYSSIIFLILLGRAAFVFPLSALSNFFNRHIERRHLISFKHQIVIWWAGLMRGAVSIALAFKQFTYSGVTMDPINATMITNTIIVVLFSTVVFGFLTKPLVSYLLPHNTTKDAEKREVKSPGEDVTLPLLSMEESVTANIIRAKDSLSMLIERPVYTIHSYWRRFDDNYMRPIFGGPTSTDRSAC | 523 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 173759 | 176599 | + | Conep09aG0004000.1 | Cone9ag0040 | 444203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone9ag0040 | 523 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 21 | 516 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Cone9ag0040 | 523 | PRINTS | Na+/H+ exchanger signature | 93 | 107 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone9ag0040 | 523 | PRINTS | Na+/H+ exchanger signature | 79 | 90 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone9ag0040 | 523 | PRINTS | Na+/H+ exchanger signature | 108 | 116 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone9ag0040 | 523 | PRINTS | Na+/H+ exchanger signature | 148 | 158 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone9ag0040 | 523 | Pfam | Sodium/hydrogen exchanger family | 30 | 439 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Cone9ag0040 | 523 | NCBIfam | sodium/hydrogen exchanger 3 | 21 | 453 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone9ag0040 | 523 | Gene3D | - | 18 | 449 | IPR038770 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone4ag0176 | Cone-Chr4:826177 | Cone9ag0040 | Cone-Chr9:173759 | 2.39E-201 | dispersed | |
| Cone5ag1776 | Cone-Chr5:12612688 | Cone9ag0040 | Cone-Chr9:173759 | 4.74E-31 | dispersed | |
| Cone7ag0181 | Cone-Chr7:761678 | Cone9ag0040 | Cone-Chr9:173759 | 2.00E-199 | dispersed | |
| Cone6ag0037 | Cone-Chr6:225996 | Cone9ag0040 | Cone-Chr9:173759 | 4.47E-106 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone9ag0040 | - | - | - | 0.0 |