Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0041 ATGGTTGCGGACGAAGAGATTTCAGAAGCTTTACAGGGCCTCTTTCACGATTCAAATCCCAACACTTTCTCCACCTTGAACGGCGTCGTTCAGCAGCTCCAGTCCAACCTTGGCCTTGACCTCTCCCACAAGGTCGACTTCATTCGAGCTCAGATCCATTTCCTCTTACGCTCTCATCCTCATCCTCAACACGACCAACAACTACAACAGCAACAGCAACCTTCCCATCCTCACAGAGACCATTTTACCTTTCAACACAACCCTAATTCCCCCCCCAACGTTGCCCCGCCTTCTTCTGCTTTCGTCACTTTTGCAACTCCAACGCCGCTTGTCAAACCTGAAGCTTCCCTCGCTAACTCCGTTTCAGGCTCTCACCCGCCCAAGGAAAGTTCCCAAACTAAACCTAAGAGAAGAGGCGGTCCAGGGGGTCTTAATAAATTATGTGGTGTCTCGCCTGAACTTCAGGCTATTGTTGGCCACCCAGAACTGCCCAGAACTGAGATTGTGAAGCAGCTATGGGCCTACATTAGGAAAAACAATCTTCAAGATCCGAGTAACAAAAGGAAAATAATATGCAATGATGAATTGCGTGTGGTATTTGAGACAGACTGCACAGACATGTTCAAAATGAACAAATTGCTAGCCAAGCATATCATTCCTCTTGAACCCACAAAGCCATCAAGCTCTAAAAAGCCAAAGCTAGTGGAATGTGGAATAAAAAGCTCAGAGCCCAGTCCTTGCATTTCTGTGATTATATCTGAAGCACTTGCAAACTTTTTGGGGGTTGATCAAAGAGAGATGCTTCAAACTGAGGTTTTAAACCGTATTTGGGAATACATAGCGGTTAATCATCTTAAGGATCCTGACAATCCAATGGCTGTGCTGTGCGATGCAAAGCTTCAGGAGCTGTTTGGTTGCGGAAGCATTTCTGCACAGGGAATACCAGAAGTTTTGAGTCGACATCATATTTTCAGGAGATCATGA 984 45.83 MVADEEISEALQGLFHDSNPNTFSTLNGVVQQLQSNLGLDLSHKVDFIRAQIHFLLRSHPHPQHDQQLQQQQQPSHPHRDHFTFQHNPNSPPNVAPPSSAFVTFATPTPLVKPEASLANSVSGSHPPKESSQTKPKRRGGPGGLNKLCGVSPELQAIVGHPELPRTEIVKQLWAYIRKNNLQDPSNKRKIICNDELRVVFETDCTDMFKMNKLLAKHIIPLEPTKPSSSKKPKLVECGIKSSEPSPCISVIISEALANFLGVDQREMLQTEVLNRIWEYIAVNHLKDPDNPMAVLCDAKLQELFGCGSISAQGIPEVLSRHHIFRRS 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 178425 180362 - Conep09aG0004100.1 Cone9ag0041 444204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0041 327 SUPERFAMILY SWIB/MDM2 domain 250 322 IPR036885 -
Cone9ag0041 327 CDD SWIB-MDM2_like 148 218 - -
Cone9ag0041 327 MobiDBLite consensus disorder prediction 115 145 - -
Cone9ag0041 327 MobiDBLite consensus disorder prediction 61 101 - -
Cone9ag0041 327 Pfam SWIB/MDM2 domain 251 321 IPR003121 -
Cone9ag0041 327 Pfam SWIB/MDM2 domain 147 218 IPR003121 -
Cone9ag0041 327 ProSiteProfiles SWIB/MDM2 domain profile. 245 324 IPR003121 -
Cone9ag0041 327 MobiDBLite consensus disorder prediction 62 89 - -
Cone9ag0041 327 SUPERFAMILY SWIB/MDM2 domain 138 223 IPR036885 -
Cone9ag0041 327 ProSiteProfiles SWIB/MDM2 domain profile. 143 220 IPR003121 -
Cone9ag0041 327 MobiDBLite consensus disorder prediction 115 129 - -
Cone9ag0041 327 Gene3D SWIB/MDM2 domain 247 326 IPR036885 -
Cone9ag0041 327 Gene3D SWIB/MDM2 domain 139 229 IPR036885 -
Cone9ag0041 327 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 252 321 - GO:0005634(PANTHER)
Cone9ag0041 327 Pfam DEK C terminal domain 3 53 IPR014876 -
Cone9ag0041 327 SMART swib_2 249 327 IPR019835 -
Cone9ag0041 327 SMART swib_2 144 223 IPR019835 -
Cone9ag0041 327 CDD SWIB-MDM2_like 250 321 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0041 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0106 Cone-Chr12:557719 Cone9ag0041 Cone-Chr9:178425 1.18E-41 dispersed
Cone1ag0038 Cone-Chr1:220553 Cone9ag0041 Cone-Chr9:178425 3.71E-111 dispersed
Cone5ag1824 Cone-Chr5:12875025 Cone9ag0041 Cone-Chr9:178425 6.98E-111 dispersed
Cone8ag0109 Cone-Chr8:562521 Cone9ag0041 Cone-Chr9:178425 7.75E-43 dispersed
Cone6ag0039 Cone-Chr6:229974 Cone9ag0041 Cone-Chr9:178425 1.81E-197 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g593 Blo03g00535 Blo03g01462 Bda07g00384 Bda09g00413 . Bpe08g01108 . . . . Cma01g01104 . Car01g00976 . . . Cpe02g00797 Bhi09g01716 . . . . . . . . . . . . . Cone6ag0039 Cone9ag0041 . . Lsi02g01868 Csa07g00991 . . . . . . Bpe11g00562 . Bma07g01280 Bma14g00318 . Cmo01g01150 . . . . . . . . . . . . . . Cla09g02037 Cam09g2126 . . . . . . . Chy01g01071 Cme01g00979
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004875 2 3 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 5 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46763 PF00076 RRM_1 1.60E-14 CL0221 Cone TR