Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone9ag0047 | ATGGCATCTACTTCGGATCCATGGGTAAAGGGATACAATGAAGCAGTAAAGCTTGCCGATGAGATAAATGGCATGATCTCCGAGAGGAGTTCTTTTGCATCCTCTGGACCAGAAGTGCAGCGCCATGCCTCTGCTATACGTAGGAAGATCACAATTTTGGAGACTAGACTTGATAGTTTACAAGGCCTTTTGACCAGGCTTCCTGGAAAGCAACCCAAGTCAGAGAAAGAGATGAATCGGCGAAAGGACGCGCTTGCAAACTTGAGATCAAAAGCTAATCAGATGGCTTCTACCTTGAATATGTCAAATTTTGCAAACCGAGACAGCTTGCTTGGGCCTGAAATTAAGCCACCTGATGCCATGAGCAGAACGGTTGGGCTGGACAACCAGGGTCTTGTTGGTCTCCAACGACAAATTATGAGAGAGCAAGATGAAGGCCTTGAGAAGCTCGAGGAGACAGTCATAAGTACAAAACACATTGCATTGGCTGTAAATGAAGAACTTGACCTTCACACAAGATTAATTGATGACTCGGACCAACATGTTGATGTTACAGACTCTCGACTAAGGAGAGTACAGAAGAACTTGGCAATTTTGAACAAACGCAGCAAGGCTGGTTGCTCTTGCATGTGCATGCTCCTATCCGTCCTCGGGATAGTGGCTCTGGCTGCTGTCATATTCCTACTCATCAAATATTTGTAA | 702 | 45.3 | MASTSDPWVKGYNEAVKLADEINGMISERSSFASSGPEVQRHASAIRRKITILETRLDSLQGLLTRLPGKQPKSEKEMNRRKDALANLRSKANQMASTLNMSNFANRDSLLGPEIKPPDAMSRTVGLDNQGLVGLQRQIMREQDEGLEKLEETVISTKHIALAVNEELDLHTRLIDDSDQHVDVTDSRLRRVQKNLAILNKRSKAGCSCMCMLLSVLGIVALAAVIFLLIKYL | 233 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 243349 | 245257 | - | Conep09aG0004700.1 | Cone9ag0047 | 444210 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone9ag0047 | 233 | CDD | SNARE_Qc | 140 | 197 | - | - | |
| Cone9ag0047 | 233 | FunFam | syntaxin-51 isoform X2 | 139 | 201 | - | - | |
| Cone9ag0047 | 233 | Gene3D | - | 139 | 201 | - | - | |
| Cone9ag0047 | 233 | Pfam | SNARE domain | 174 | 223 | IPR000727 | - | |
| Cone9ag0047 | 233 | SUPERFAMILY | SNARE fusion complex | 128 | 198 | - | - | |
| Cone9ag0047 | 233 | PANTHER | SYNTAXIN | 11 | 214 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
| Cone9ag0047 | 233 | SMART | tSNARE_6 | 132 | 199 | IPR000727 | - | |
| Cone9ag0047 | 233 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 137 | 199 | IPR000727 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone14ag1185 | Cone-Chr14:9681715 | Cone9ag0047 | Cone-Chr9:243349 | 1.35E-90 | wgd | |
| Cone15ag1202 | Cone-Chr15:9586818 | Cone9ag0047 | Cone-Chr9:243349 | 5.90E-101 | wgd | |
| Cone6ag0041 | Cone-Chr6:250828 | Cone9ag0047 | Cone-Chr9:243349 | 2.91E-140 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone9ag0047 | K08503 | - | cit:102608030 | 389.037 |