Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0053 ATGGATTTTGATTCGGTTCCAATGACTACATGCTCCAAGGGGCACCAGAAGATCTACCAGCAACGGTTCAATTACGCTGATTTAGATGGCGAGGGTCGCATTACAGGGAATGATGCAATCAAGTTCTTTTCAATGTCAAATTTGCCTCGGGAAGATCTCAAGCAGATTCCAAGCGGCAGGGATTTCTGGGTTTCCACGAATTCATCACTACTATGCAGCCAGTTTCTCCATGACATCTTAAACTTGAATATTGATGTTGATTTAGAGAATCTGGAACCTCCCACAATGCAAGGTTTAGATGAATTAATAGCAAAGAAAATGTCTAAAGAGAAGCCAAGTGAGGTTCATTCAAATGGTAGGATTAGTTGTTCGCCAGTGAAAGAACCGGGCATAGTTAGATGGTTTTCCGCCAAATCATCAGAAGAAATTACCCTTTCCTCTGTCACGTCAATCATTGATGGTTTGAAGAGGTTGTATGTCAAGAAGCTGAAACCATTAGAAGATACTTTTATCTCTTCAATAGTTTTGTGTCTCCGTTGCTGGTACCGGGCAGCAGATATCCTTGTACACTTCCATGACAGCCTATGA 588 41.67 MDFDSVPMTTCSKGHQKIYQQRFNYADLDGEGRITGNDAIKFFSMSNLPREDLKQIPSGRDFWVSTNSSLLCSQFLHDILNLNIDVDLENLEPPTMQGLDELIAKKMSKEKPSEVHSNGRISCSPVKEPGIVRWFSAKSSEEITLSSVTSIIDGLKRLYVKKLKPLEDTFISSIVLCLRCWYRAADILVHFHDSL 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 266989 268434 - Conep09aG0005300.1 Cone9ag0053 444216

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0053 195 Pfam N-terminal EH-domain containing protein 154 170 IPR031692 -
Cone9ag0053 195 Gene3D - 9 68 - -
Cone9ag0053 195 Gene3D - 126 171 - -
Cone9ag0053 195 ProSiteProfiles EF-hand calcium-binding domain profile. 14 49 IPR002048 GO:0005509(InterPro)
Cone9ag0053 195 SUPERFAMILY EF-hand 11 58 IPR011992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0053 K12483 - - csv:101219512 172.94
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0053 Cone-Chr9:266989 Cone9ag1148 Cone-Chr9:8125139 3.53E-34 dispersed
Cone14ag1172 Cone-Chr14:9629058 Cone9ag0053 Cone-Chr9:266989 7.97E-31 wgd
Cone15ag1188 Cone-Chr15:9543008 Cone9ag0053 Cone-Chr9:266989 3.35E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g566 . Blo03g01458 . Bda09g00407 Bpe09g00155 Bpe08g01114 . Bma13g01076 Cmo16g00945 Cmo06g00894 . . . . . . . . . . . . . . Cla10g00481 Cam10g0468 Cec10g0488 Cco10g0476 Clacu10g0488 Cmu10g1316 Cre10g0721 . Cone9ag0053 Cone14ag1175 Cone15ag1188 . Csa03g00482 . Cme06g02843 . Blo10g00846 . Bda12g00931 . . Bma07g01286 . Sed08g2983 . . . Cma16g00910 . Car16g00884 Cpe14g00735 . Bhi11g00583 Tan01g1744 Cmetu12g0825 . Hepe07g1278 . . . . . . . . . Lsi05g00569 . Chy06g01840 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0054175 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1