Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0078 ATGCACCAGGTTATTCCTTCTGACCAGCAGGCTCAGCAGTATCACCAACAGCACCCGGCCGTGCAGCAGTGGATGATGATGCCGCATCAGCAGCAGCCTCAGCCGATTCCACCCCCGGCTGGCTGGACCCCGCAGGCAGTACCTCCGCCTATCCCGGCTCAGCAGTATCCATCTGCTCCAACTGGCTCCGACGAGATCTGCTCCCTATGGATCGGCAACTTGCAGCAATGGATGGATGAGAGTTATCTTACCAGCTGCTTCTCTCAGACAGGCGAGGTTGTTTCAGCTAAGGTTATTCGCAACAAGCAAACCAGCATGCCAGAAGGTTATGGATTCATTGAGTTTTCCAGTCATGCTGCTGCAGAGCGGATATTACAAACATTTAACAGCACATTGATGCCAAATTCTGAGCAGAATTTTCGACTTAACTGGGCCACTCTTGGTGCTGGTGAGAGGCGTCAAGATGATGGCTCAGACTATACAATTTTCATTGGAGATTTGGCTGGTGATGTCACTGATTATACTCTTCAAGAAACTTTTAAGAGTGTGTACCAGTCTGTGAAGGGTGCAAAGGTTGTAACAGATAGGACCACTGGGCTTTCCAAAGGTTATGGCTTTGTAAGGTTTGCTGATGAAAATGAACAATTGCGGGCCCTGACTGAGATGAATGGCATGTATTGTTCTTCGAGGCCCATGCGTGTTGGAGCGGCTGCCAATAAAAAACCTGTTGGAGGACAACAATATCAAACAGGAGGCACATACCAGAGTACTCAAGGAAATCAAGGGGAGGATGATCTAAACAATACAACAATTTTTGTTGGGGGTCTGGATACCAGTGTCACAGATGAGGTATTGAGACAAGTTTTTGGCCAATTCGGAGAGCTTGTTCATGTGAAAATCCCTATGGGAAAGCGATGTGGTTTTGTTCAGTTTGCAAACAGACCCTGTGCAGAGCAAGCATTGTCAATGTTGAATGGCACACAACTGGGAGGACAAAATGTCCGTCTTTCTTGGGGGCGTAGTCCATCAAACAAACAGCCAGATCAGTCCCAGTGGAATGGTGGTGGATTTTATGGCTACCCACAACAAGGATATGATTCATATGCATATGCACCAAATCACCAAGACCCGAGCATGTATTATGGAGGGTACCCTGGCTATGGCAATTTCCAGCAGCCTGGTGCATACCAACAGCCACCACAGTGA 1206 48.01 MHQVIPSDQQAQQYHQQHPAVQQWMMMPHQQQPQPIPPPAGWTPQAVPPPIPAQQYPSAPTGSDEICSLWIGNLQQWMDESYLTSCFSQTGEVVSAKVIRNKQTSMPEGYGFIEFSSHAAAERILQTFNSTLMPNSEQNFRLNWATLGAGERRQDDGSDYTIFIGDLAGDVTDYTLQETFKSVYQSVKGAKVVTDRTTGLSKGYGFVRFADENEQLRALTEMNGMYCSSRPMRVGAAANKKPVGGQQYQTGGTYQSTQGNQGEDDLNNTTIFVGGLDTSVTDEVLRQVFGQFGELVHVKIPMGKRCGFVQFANRPCAEQALSMLNGTQLGGQNVRLSWGRSPSNKQPDQSQWNGGGFYGYPQQGYDSYAYAPNHQDPSMYYGGYPGYGNFQQPGAYQQPPQ 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 347050 351079 + Conep09aG0007800.1 Cone9ag0078 444241

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0078 401 Gene3D - 67 146 IPR012677 -
Cone9ag0078 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 160 239 IPR000504 GO:0003723(InterPro)
Cone9ag0078 401 CDD RRM2_SECp43_like 159 238 - -
Cone9ag0078 401 CDD RRM1_SECp43_like 68 146 - -
Cone9ag0078 401 Gene3D - 148 254 IPR012677 -
Cone9ag0078 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 67 147 IPR000504 GO:0003723(InterPro)
Cone9ag0078 401 FunFam Polyadenylate-binding protein RBP45 5 151 - -
Cone9ag0078 401 SUPERFAMILY RNA-binding domain, RBD 259 367 IPR035979 GO:0003676(InterPro)
Cone9ag0078 401 Gene3D - 255 375 IPR012677 -
Cone9ag0078 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 37 345 IPR050825 GO:0003729(PANTHER)|GO:0003729(InterPro)|GO:0005829(PANTHER)
Cone9ag0078 401 MobiDBLite consensus disorder prediction 335 356 - -
Cone9ag0078 401 SUPERFAMILY RNA-binding domain, RBD 66 240 IPR035979 GO:0003676(InterPro)
Cone9ag0078 401 Pfam RNA recognition motif 271 334 IPR000504 GO:0003723(InterPro)
Cone9ag0078 401 Pfam RNA recognition motif 69 136 IPR000504 GO:0003723(InterPro)
Cone9ag0078 401 Pfam RNA recognition motif 162 232 IPR000504 GO:0003723(InterPro)
Cone9ag0078 401 FunFam Polyadenylate-binding protein RBP45C 152 244 - -
Cone9ag0078 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 341 IPR000504 GO:0003723(InterPro)
Cone9ag0078 401 FunFam Polyadenylate-binding protein RBP45C 246 351 - -
Cone9ag0078 401 SMART rrm1_1 270 337 IPR000504 GO:0003723(InterPro)
Cone9ag0078 401 SMART rrm1_1 68 143 IPR000504 GO:0003723(InterPro)
Cone9ag0078 401 SMART rrm1_1 161 235 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0078 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1392 Cone-Chr7:9994572 Cone9ag0078 Cone-Chr9:347050 6.76E-122 dispersed
Cone8ag1145 Cone-Chr8:10021954 Cone9ag0078 Cone-Chr9:347050 2.95E-118 dispersed
Cone9ag0078 Cone-Chr9:347050 Cone9ag1069 Cone-Chr9:6013257 4.25E-155 dispersed
Cone6ag0064 Cone-Chr6:343548 Cone9ag0078 Cone-Chr9:347050 3.45E-263 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002064 4 5 3 6 2 2 0 1 1 0 0 2 2 2 2 3 2 6 1 2 1 2 2 2 1 2 2 3 2 2 65