Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0099 ATGCAGATTTTTGTGAAGACCCTTACCGGTAAGACCATCACATTAGAGGTGGAGACCTCTGACACCATAGACAACGTGAAGGCTAAGATTCAAGACAAGGAAGGTATTCCATCGGATCAGCAAAGACTGATATTTGCAGGCAAACAGCTTGAAGATGGTCGCACTTTAGCTGACTACAATATCCAGAAGGAGTCGACGCTACACTTAGTTCTCCGACTCCGTGGCGGAATGCAGATATTCGTGAAAACCCTGACTGGTAAAACGATTACGTTGGAAGTTGAAAGCTCAGACACCATAGATAACGTGAAAACAAAGATTCAGGACAAAGAGGGTATCCCCCCAGATCAACAAAGGTTGATCTTTGCAGGCAAACAGCTTGAAGATGGTAGGACTTTGGCTGATTACAATATCCAGAAGGAGTCTACTCTCCACTTGGTGCTCCGACTCCGTGGTGGAATGCAGATATTCGTGAAGACATTGACTGGAAAGACCATAACCTTGGAAGTAGAAAGTTCAGACACGATCGACAATGTGAAGACTAAGATTCAAGATAAGGAAGGTATTCCACCTGATCAACAAAGGCTTATTTTTGCTGGGAAGCAACTCGAGGACGGTAGGACCTTGGCTGATTACAACATCCAGAAGGAGTCAACTCTTCATCTGGTGCTGCGTTTGCGTGGTGGAATGCAGATATTCGTGAAGACATTGACCGGGAAAACAATTACCTTGGAAGTGGAGAGTTCCGACACCATCGACAATGTGAAGACAAAGATTCAAGATAAGGAGGGAATACCTCCAGACCAGCAAAGACTAATATTTGCTGGCGCCGAAGCCGAGAAGGTATCTTCCGCTTTTGCACTTTGTCATAGGCAATTCCAGGTTCTTACATGTACAAAACTTCAAGATTTTGCTTTAAGGAGTTATAGTTCTGTTATTGAGCAAGCATTTTCACGACCAAAACGCAACTTCAGTGGGGGTGATCACGTCCATTTAACTCAGATTGAAAAGGCCTATCAAGGGCTTGATAAGCTGTCCTTGGACTTGGGGCCAAGTTTCATGTCTGAACTCGACAACCAAATTCCTTCCACCTATGATCCGTTTGCTGATGCAAATGCTGAGGACTCTGGTGCTGGGTCAAAAGAGTACGTGCACATTCGTATACAGCAGCGAAATGGTAGGAAAAGCCTGACAACTGTCCAGGGACTCAAGAAAGAATTCAGTTACAACAAGATTCTCAAGGACCTCAAGAAGGAGTTCTGCTGCAATGGCACTGTTGTTCAGGACCCTGAGCTAGGCCAGGTTATTCAACTGCAAGGTGACCAGAGGAAGAATGTATCCACATTTCTTGTCCAGGCAGGCATTGTGAAGAAGGATAATATCAAGATTCACGGTTTCTGA 1398 44.78 MQIFVKTLTGKTITLEVETSDTIDNVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGAEAEKVSSAFALCHRQFQVLTCTKLQDFALRSYSSVIEQAFSRPKRNFSGGDHVHLTQIEKAYQGLDKLSLDLGPSFMSELDNQIPSTYDPFADANAEDSGAGSKEYVHIRIQQRNGRKSLTTVQGLKKEFSYNKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKDNIKIHGF 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 430680 434235 - Conep09aG0009900.1 Cone9ag0099 444262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0099 465 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Cone9ag0099 465 FunFam Polyubiquitin 3 78 152 - -
Cone9ag0099 465 SUPERFAMILY eIF1-like 347 465 IPR036877 GO:0003743(InterPro)|GO:0006413(InterPro)
Cone9ag0099 465 FunFam Polyubiquitin-C 229 290 - -
Cone9ag0099 465 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Cone9ag0099 465 CDD Ubl_ubiquitin 153 228 - -
Cone9ag0099 465 ProSiteProfiles Ubiquitin domain profile. 229 275 IPR000626 GO:0005515(InterPro)
Cone9ag0099 465 Pfam Translation initiation factor SUI1 380 454 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cone9ag0099 465 FunFam Ubiquitin-60S ribosomal L40 fusion 1 77 - -
Cone9ag0099 465 CDD Ubl_ubiquitin 1 76 - -
Cone9ag0099 465 NCBIfam translation initiation factor SUI1 359 465 IPR005874 GO:0003743(InterPro)
Cone9ag0099 465 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Cone9ag0099 465 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515(InterPro)
Cone9ag0099 465 ProSiteProfiles Ubiquitin domain profile. 153 228 IPR000626 GO:0005515(InterPro)
Cone9ag0099 465 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515(InterPro)
Cone9ag0099 465 PRINTS Ubiquitin signature 87 107 IPR019956 -
Cone9ag0099 465 PRINTS Ubiquitin signature 129 150 IPR019956 -
Cone9ag0099 465 PRINTS Ubiquitin signature 108 128 IPR019956 -
Cone9ag0099 465 CDD eIF1_SUI1 381 464 IPR005874 GO:0003743(InterPro)
Cone9ag0099 465 Gene3D - 77 152 - -
Cone9ag0099 465 Gene3D - 153 228 - -
Cone9ag0099 465 Gene3D - 1 76 - -
Cone9ag0099 465 SUPERFAMILY Ubiquitin-like 152 228 IPR029071 -
Cone9ag0099 465 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Cone9ag0099 465 FunFam Eukaryotic translation initiation factor SUI1 354 465 - -
Cone9ag0099 465 Gene3D - 229 277 - -
Cone9ag0099 465 SUPERFAMILY Ubiquitin-like 228 276 IPR029071 -
Cone9ag0099 465 ProSiteProfiles Translation initiation factor SUI1 family profile. 383 453 IPR001950 GO:0003743(InterPro)|GO:0006413(InterPro)
Cone9ag0099 465 ProSitePatterns Ubiquitin domain signature. 179 204 IPR019954 -
Cone9ag0099 465 SMART ubq_7 153 224 IPR000626 GO:0005515(InterPro)
Cone9ag0099 465 SMART ubq_7 229 298 IPR000626 GO:0005515(InterPro)
Cone9ag0099 465 SMART ubq_7 1 72 IPR000626 GO:0005515(InterPro)
Cone9ag0099 465 SMART ubq_7 77 148 IPR000626 GO:0005515(InterPro)
Cone9ag0099 465 CDD Ubl_ubiquitin 77 152 - -
Cone9ag0099 465 FunFam Polyubiquitin 3 153 228 - -
Cone9ag0099 465 Pfam Ubiquitin family 231 276 IPR000626 GO:0005515(InterPro)
Cone9ag0099 465 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515(InterPro)
Cone9ag0099 465 Pfam Ubiquitin family 155 226 IPR000626 GO:0005515(InterPro)
Cone9ag0099 465 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515(InterPro)
Cone9ag0099 465 Gene3D - 350 465 - -
Cone9ag0099 465 PANTHER UBIQUITIN 229 280 IPR050158 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0019941(PANTHER)|GO:0031386(PANTHER)|GO:0031625(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1167 Cone-Chr13:9142527 Cone9ag0099 Cone-Chr9:430680 8.74E-44 dispersed
Cone19ag1145 Cone-Chr19:8154038 Cone9ag0099 Cone-Chr9:430680 1.21E-42 dispersed
Cone1ag1011 Cone-Chr1:55079875 Cone9ag0099 Cone-Chr9:430680 8.74E-44 dispersed
Cone6ag0069 Cone-Chr6:358748 Cone9ag0099 Cone-Chr9:430680 9.35E-54 dispersed
Cone8ag1444 Cone-Chr8:11192286 Cone9ag0099 Cone-Chr9:430680 1.68E-69 dispersed
Cone9ag0084 Cone-Chr9:368946 Cone9ag0099 Cone-Chr9:430680 4.73E-54 dispersed
Cone10ag1428 Cone-Chr10:11124446 Cone9ag0099 Cone-Chr9:430680 3.39E-78 transposed
Cone12ag1386 Cone-Chr12:10243169 Cone9ag0099 Cone-Chr9:430680 5.24E-68 wgd
Cone14ag1124 Cone-Chr14:9356178 Cone9ag0099 Cone-Chr9:430680 5.58E-67 wgd
Cone15ag1143 Cone-Chr15:9273928 Cone9ag0099 Cone-Chr9:430680 5.58E-67 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0099 K08770 - rcu:107262163 525.398