Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0100 ATGGCAGGAAAGAGCAGCATGTTTCGATACGCGGATGGTCTAGACAAGTTATTGATGTTTTTCGGAACTTTAGGATGTATGGGAGATGGCTTGCAAAACCCACTTATGATGTTCATTCTTAAAGATGTTATCAATGCTTATGGAGATCCTAATGGCTCTGTCACAATGGACACTGTTAACAAGTTTTCTCTGCGTCTACTCTATGCGGCAATTGGAGTAGGCCTTTCTGCCTTCGTAGAGGGATATTGTTGGGCAAGAACAGCGGAGAGACAGACATCTCGAATGAGATTGGAGTATCTAAAATCTGTGCTCAGACAAGAAGTCGGTTTCTACGACACACAAACTGCCGGATCTTCAACGACTAACCAAGTGGTCACACTCATAACCTCGGATGCGAACACGATCCAAGTTGCCTTGTGTGAGAAGATACCTAACTGTCTTGCTTACATGTCCACTTTCTTCTTCTGCCACATATTCGCCTTTATGCTCTCATGGAGACTCACCTTGGCTGCAATACCTCTCTCCATCATGTTCATTGCTCCGGCCCTTGTGTTTGGGAAAAAGATGATGGATCTGATAATGAAGATGATTGAATCTTATGGAGTTGCTGGTGGGATTGCTGAACAAGCGATTTCTTCAATAAGAACTGTTTATTCATATGTAGGAGAGCAGCAGACATTAGATAGGTTTAGGAAGGCACTTGAGAAAAGTGCGGAATTCGGGACAAAATCTGGGTTTGTAAAGGGTTTAATGTTAGGAAGCATGGGAGTCATATACATCGGATGGGGTTTTCAGGCATGGGTTGGTACTTATTTGGTTACAGAAAAAGGCGAAAAAGGCGGCAACGTTTTCATAGCCGGTTTCAATGTTCTCATGGGAGGATTGAGCGTTTTAACTGCACTACCATATCTAACTTCACTCACAGAGGCAGCATCTGCTACAACTCGGATCCTTGAGATGATTGACCGGGTCCCGGAAATAGACAATGAAGATAGGAAGGGGAAGGCTCTATCACGTGTAAGAGGAGAGATCGAGTTTAAGGATGTTGAGTTTAGTTATCCGTCAAGACCGGATTCACCCATTCTACAAGGATTCAATCTGAAAGTTACAGCCGGTAAGAGAATCGGACTTGTAGGGGGCAGTGGTTCAGGAAAATCCACAGTCATTGCATTGCTAGAAAGATTTTATGACCCAAATGAAGGAGAGATACTGTTGGATGGATACAATATTGATAGACTTCAGCTTAAATGGTTGAGATCTCAAATGGGTCTTGTCAATCAAGAACCTGTCCTCTTTGCAACATCAATAAGAGAGAATATTTTGTTCGGGAAAGAAGGAGCTTCCATGGAGCTTGTAGTTGATGCCGCTAAAGCCGCTAATGCGCATGATTTCATTATTAAATTACCGGATGGATATGAAACTCAAGTTGGCCAATTCGGATTTCAATTATCAGGGGGGCAAAAGCAGCGAATCGCAATAGCAAGAGCTCTTTTACGAGACCCGAAAATCCTTCTACTAGACGAAGCAACTAGTGCACTAGATGCTCAGTCCGAAAGAACAGTACAAGAAGCAATAGACCAAGCATCAAAGGGAAGAACAACTATCATAATTGCCCACAGGCTCACCACTATCCGAACGGCGCATCAGATCATAGTTCTTCAATCTGGAAAAGTGATCGAGTCTGGTTCTCACAACGAGCTTATGCAAATGAATTCTGGGCAAGGCGGAGAATATTCCAAAATGGTACAGTTGCAGCAAATGGCAATGCTGAATGATTCTTCGATCGATTCTAATCCTCAAATGGAGGCAAGAAATCGACAACGTACAAGTGTTCCGGCAAGTCCGTTAAGCGTAAGATCAAGCGGTTTTAATACTCCGGCTAGGTACCCTTTTGGCACGGGAATGTCCACCTCAATGGGAACTCCCATGTCAATGGGCACACCTTACTTATACTCCGTCCAATTCGAACCGGACGGTGAAAGTGAAGAACACGACTTGAAAAAAAAGTCAGTTTCTTCTTCTTCTCCACGTCCTTCACAATGGAGGCTGCTGAAAATGAATGCACCTGAATGGGAACAAGCCTTACTCGGATGCCTGGGTGCACTAGGATCCGGTGCAGTACAGCCAATAAATGCCTATTGTGTGGGTGCACTTATTTCGGTTTATTTTCATGCCACTGAAGCCCATATCAAGTCCAAATCTAGAAGATTGTCACTTATCTTCTTAGCCATTGGTGTTTTCAACTTCTTCACTAATATCCTTCAACACTACAACTTCGCAATCATGGGCGAAAGACTAACCAAGAGAGTACGTGAAAATATATTAGCCAAATTGATGACATTTGAGATCGGGTGGTTCGATCAAGACGAGAACACAAGTGCAGCCATTTGTGCTCGGTTATCAAGCGAAGCCAATATGGTCCGGTCCCTTGTAGGGGACCGGATGTCATTGCTCGTCCAAGCCATTTTTGGGTCCATTTTTGCTTATGGGATTGGGCTTAAGCTGTCATGGAGGCTAACCCTGGTCATGATTGCGGTGCAGCCTTTAGTGATTGGAAGTTTCTACATGAGAAGTGTGTTGATGAAAGGTATGGCGGAAAAGGCCCGAAAGGCCCAAAGGGAAGGAAGCCAGTTAGCAAGTGAAGCTGTTATTAACCACCGGACTATAACCGCCTTTTCTTCTCAGAAAAAAATTGTGTGGCTGTTTGGCAACACATTGAGAGGTCCGAAGAAGGAGAGTGCTACACAGTCGTGGATTTCGGGTTTGGGTTTGTTTAGTTCTCAATTCTTTAGCACGGCTTCTACAGCTTTAGCTTATTGGTACGGAGGGAAGCTACTGACACAAGGATTGATAAGCCCCGAGCATATCTTTCAAGCATTCTTGATATTGTTATTCACAGCATATATCATTGCAGATGCTGGAAGTATGACTTCTGATTTATCCAAAGGAAGCAATGCGGTTAGATCGGTTTTTGCAATCCTGGACCGGAAAAGCGAGATCGACCCTGATAACAAGTGGGGACAGGATGCAAAGAGAAGGATCAAGGGCAGAGTCGAGCTTAAAAATGTCTTCTTTGCATATCCAACCAGACCTAATCAAATGATCTTTAATGGGTTGAGTCTTAAAATCGAATCGGGAAGAACGGTTGCACTAGTTGGACAAAGTGGGTCTGGAAAGTCTACCATAATTGGTCTTATAGAAAGGTTTTATGATCCTTTGCGAGGATCAGTTCACATAGATGAACAAGATGTTAAGACCTACAATTTGAGATTACTAAGGTCTCAAATTGCATTAGTTAGCCAAGAGCCAACCCTTTTTGCCGGAACTATCCGTGAAAACATCACGTACGGGAAAGAAAACGCAAGAGAATCAGAGATAAGAAAAGCTGCAATTCTTGCCAATGCTCATGAATTCATAAGTGGGATGAAGGATGGATATAATACATATTGTGGAGAGAGAGGAGCTCAACTGTCAGGAGGTCAGAAGCAGAGGATTGCATTGGCCCGAGCGATATTGAAGAACCCGTCGATTCTTCTACTGGACGAAGCTACAAGTGCACTCGATAGTGTATCAGAAAACTTGGTACAAGAAGCATTGGAGAAGATGATGGTTGGAAGAACAAGTATTGTCGTGGCTCATAGGTTGTCTACTATACAGAAGTCAGACTCCATTGCGGTTATCAAGAACGGGAAAGTCGTGGAAAAAGGCTCGCATAACGAACTCTTTTCCCTCGGAAAAGGCGGGGAGTATTATTCTCTGATCAAACTCCAAACAGGAAGATCATCATCATCCTCTCAGTGA 3801 43.57 MAGKSSMFRYADGLDKLLMFFGTLGCMGDGLQNPLMMFILKDVINAYGDPNGSVTMDTVNKFSLRLLYAAIGVGLSAFVEGYCWARTAERQTSRMRLEYLKSVLRQEVGFYDTQTAGSSTTNQVVTLITSDANTIQVALCEKIPNCLAYMSTFFFCHIFAFMLSWRLTLAAIPLSIMFIAPALVFGKKMMDLIMKMIESYGVAGGIAEQAISSIRTVYSYVGEQQTLDRFRKALEKSAEFGTKSGFVKGLMLGSMGVIYIGWGFQAWVGTYLVTEKGEKGGNVFIAGFNVLMGGLSVLTALPYLTSLTEAASATTRILEMIDRVPEIDNEDRKGKALSRVRGEIEFKDVEFSYPSRPDSPILQGFNLKVTAGKRIGLVGGSGSGKSTVIALLERFYDPNEGEILLDGYNIDRLQLKWLRSQMGLVNQEPVLFATSIRENILFGKEGASMELVVDAAKAANAHDFIIKLPDGYETQVGQFGFQLSGGQKQRIAIARALLRDPKILLLDEATSALDAQSERTVQEAIDQASKGRTTIIIAHRLTTIRTAHQIIVLQSGKVIESGSHNELMQMNSGQGGEYSKMVQLQQMAMLNDSSIDSNPQMEARNRQRTSVPASPLSVRSSGFNTPARYPFGTGMSTSMGTPMSMGTPYLYSVQFEPDGESEEHDLKKKSVSSSSPRPSQWRLLKMNAPEWEQALLGCLGALGSGAVQPINAYCVGALISVYFHATEAHIKSKSRRLSLIFLAIGVFNFFTNILQHYNFAIMGERLTKRVRENILAKLMTFEIGWFDQDENTSAAICARLSSEANMVRSLVGDRMSLLVQAIFGSIFAYGIGLKLSWRLTLVMIAVQPLVIGSFYMRSVLMKGMAEKARKAQREGSQLASEAVINHRTITAFSSQKKIVWLFGNTLRGPKKESATQSWISGLGLFSSQFFSTASTALAYWYGGKLLTQGLISPEHIFQAFLILLFTAYIIADAGSMTSDLSKGSNAVRSVFAILDRKSEIDPDNKWGQDAKRRIKGRVELKNVFFAYPTRPNQMIFNGLSLKIESGRTVALVGQSGSGKSTIIGLIERFYDPLRGSVHIDEQDVKTYNLRLLRSQIALVSQEPTLFAGTIRENITYGKENARESEIRKAAILANAHEFISGMKDGYNTYCGERGAQLSGGQKQRIALARAILKNPSILLLDEATSALDSVSENLVQEALEKMMVGRTSIVVAHRLSTIQKSDSIAVIKNGKVVEKGSHNELFSLGKGGEYYSLIKLQTGRSSSSSQ 1266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 435334 439481 - Conep09aG0010000.1 Cone9ag0100 444263

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0100 1266 ProSitePatterns ABC transporters family signature. 483 497 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone9ag0100 1266 FunFam ABC transporter B family member 15-like 7 344 - -
Cone9ag0100 1266 MobiDBLite consensus disorder prediction 595 622 - -
Cone9ag0100 1266 Pfam ABC transporter 362 511 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone9ag0100 1266 CDD ABC_6TM_Pgp_ABCB1_D2_like 684 1000 - -
Cone9ag0100 1266 SUPERFAMILY ABC transporter transmembrane region 681 1001 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone9ag0100 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 335 585 IPR027417 -
Cone9ag0100 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1018 1254 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone9ag0100 1266 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 344 580 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone9ag0100 1266 Gene3D ABC transporter type 1, transmembrane domain 66 991 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone9ag0100 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 695 982 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone9ag0100 1266 FunFam ABC transporter B family member 4 1008 1263 - -
Cone9ag0100 1266 Pfam ABC transporter transmembrane region 696 967 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone9ag0100 1266 Pfam ABC transporter transmembrane region 20 293 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone9ag0100 1266 SUPERFAMILY ABC transporter transmembrane region 7 328 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cone9ag0100 1266 FunFam ABC transporter B family member 19 334 586 - -
Cone9ag0100 1266 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 317 - -
Cone9ag0100 1266 Pfam ABC transporter 1037 1185 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone9ag0100 1266 CDD ABC_MTABC3_MDL1_MDL2 344 585 - -
Cone9ag0100 1266 PANTHER ABC TRANSPORTER B FAMILY 6 612 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Cone9ag0100 1266 CDD ABC_MTABC3_MDL1_MDL2 1018 1257 - -
Cone9ag0100 1266 ProSitePatterns ABC transporters family signature. 1157 1171 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cone9ag0100 1266 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1013 1257 IPR027417 -
Cone9ag0100 1266 Gene3D - 342 598 IPR027417 -
Cone9ag0100 1266 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 309 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cone9ag0100 1266 SMART AAA_5 371 556 IPR003593 GO:0016887(InterPro)
Cone9ag0100 1266 SMART AAA_5 1045 1231 IPR003593 GO:0016887(InterPro)
Cone9ag0100 1266 FunFam Putative ABC transporter B family member 8 657 1005 - -
Cone9ag0100 1266 Gene3D - 1008 1264 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0100 K05658 - - csv:101213474 1957.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone13ag1076 Cone-Chr13:8761774 Cone9ag0100 Cone-Chr9:435334 1.38E-76 dispersed
Cone19ag1062 Cone-Chr19:7799653 Cone9ag0100 Cone-Chr9:435334 2.89E-80 dispersed
Cone19ag1084 Cone-Chr19:7890099 Cone9ag0100 Cone-Chr9:435334 0 dispersed
Cone7ag0712 Cone-Chr7:4145238 Cone9ag0100 Cone-Chr9:435334 0 dispersed
Cone9ag0020 Cone-Chr9:104129 Cone9ag0100 Cone-Chr9:435334 3.66E-29 dispersed
Cone9ag0100 Cone-Chr9:435334 Cone9ag0928 Cone-Chr9:4549763 6.29E-298 dispersed
Cone9ag0100 Cone-Chr9:435334 Cone2ag0163 Cone-Chr2:854724 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g448 . Blo03g01437 . . . . . . . . . Cma09g00928 . . . . . Bhi09g01941 . . . Hepe01g1307 Mch11g1155 . . . . . . . . . Cone9ag0100 . . . . Chy04g00994 . . . . . . . . . . . Cmo09g00924 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136