Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0103 ATGATTGGAGTCGAAGTTAGAGAATTGGTGATTTCTTTGAATTGGATATTGATTGTTTTGCTATATTTGTTCGTGGGGATGAAGAATGATGAATCCCAGAAGCAGCAGCAGCAGCAACAGCAGGGTGTTGGGCCTCGTTCTGGCCGGACCAACGGGTTTATCTCGAACTCTTTTCGGGCTTTTTCAAGCTACTTGAGGATTGTATCGTCTGGTGCTTCTTCTGTGGCCCGGTCAACTGCCTCTGTGGCATCTTCAATTGTGGATAAGGATGATGATACCAATTGCGACCAGGTGAACTGGGCTGGGTTTGACAAGTTAGAGAGCGAGGGATGTTCCGCTCGGCGAGTACTTCTATTGGGCTATCAGTCTGGATTCCAAGTTTGGGATGTTGAAGAAGCAAATAACGTCCGAGACTTAGTTTCCAAACATGATGGTCCTGTTTCATTCATGCAAATGTTGCCAAGACCAGCTTTGTCAAGGAAATCAGACGATCGTCTTCTAGAAAGTCGACCATTGCTTGTACTCTGTGCTGATGTATCTGTTTCTACTGGTTTTAACCTTCAGGATGGGTTGTCAACTCCAGGCAATGTGGCTATTTCAAATGGCCTTGACGTCTCCAATGGTAGTTTTTCGCCTACTATTGTTCGGTTTTATTCCCTGAGATCTCAGTCTTATGTTCATGAGGTCAAGTTCAGATCAGCTGCTTATTGTGTAAGGTGCAGCTCTCGAGTCGTTGCCATTTCTCAAGCAGCTCAGATACACTGCTTCAATTCTCTGTCCTTAGAGAGGGAATATACGATTCTTACAAATCCTATTGTCACGGGATATCCTGGTTCCGGGATTGGCTACGGACCTCTAGCGGTGGGCCCCAGATGGCTGGCTTACAGTGGAAGTCCAACCGTCACCTCCAATTCAGGGCGTGTAATCCCACAACATCTGACAAATTCTGCAAGCCTTCCTGGTTTTTCTCAAAATGGAGGCTTAGTTGCCCACTATGCTAAAGAATCAAGTAAGCAACTTGCTGCTGGAATAATGAGCTTGGGTGATATGGGATATAGGAAGCTCTCAAGGTACTGCTCCGAGCTTTTACCTGACAGTAATAATATTTCACAATCAGGGACTCGTTTGAAGGCCAATGGAACTCTTAATGGCCATTTGACCGATTCAGATAATGTTGGAATGGTTATTGTCCGGGATATCGTCAGAAGAGCTGTTATCGCACAATTCAGGGCCCACAAGAGTCCTATTTCGGCATTATGCTTCGATCCTAGTGGGACCCTTTTGGTAACTGCTTCTGTTCATGGTCACAACATAAATGTCTTTAAAATTATGCCGGGTCGGTCAGGAATTTCCTCAACATCTCCTGCCACAGCTTCTTGTATTCATCTTTACAGACTGCAGCGTGGACTGACAAATGCAGTCATCCGTGACATTAGTTTTAGTGATGACAGCAACTGGATAATGATCAGTTCCTCTAGGGGCACAAGCCATTTGTTCACTTTAAACCCTATTGGAGGATCGGTCAACTTTCATTCTGCGGATCCTAGTTTTACGGCAAAAAATGGTGGGTTCGGTGTCACAACTGAGCCACCAGCCCACGGCCAACCTACTGAACTGGGCCTTATTGCCACGGGCCCTCCTGTCACTCTTTCTGCTGTGAGCAGAATACGTAGCAGAAACAATGGATGGACCAGTACTGTGACCTGTGCAGCTGCAGCAGCAACTGGAAGGATTAGTTCCCTACCTGGGGCTATTGCCTCATCTTTTCATAATTGCAAGATTGATGATGCTTTATATGGGGATAATGGCTCTTTATCAAAGGCTAAGTTTCATCTTCTGGTCTTTTCCCCTTCTGGTAGTATGATCCAATATGCTTTGAGAATCAGCTTAGATTCATCAATGATGGACTTGGGTGGATTAAACACTGCTCACGAAATAGCAGGTCTAGAGTGTGATGCCAGATTAGGGGTTGAAGCTATTCAGAAATGGAATATATGTCAGAAGCAAAACCGTAGGGAGGTAGAAGATAACATTGACATATATGGTGATAATAAACACTTTGAAGTGAAGGAAAAACCAAAGATTAGCATGGATGAGAAATATCATTTGTATATGTCGGAAGCTGAACTGCAAATGCATGAACAACTGACCCCACTGTGGGCAAACCCCGAGCTATCTTTCCAATCGATCCAAGGAGATGGTATTGAAGTAGATGCAGAAAATAAGTTGGGAGGGGAAATTGAAATTGAAAGGATTCCCTCTCTAATGATTGAAGTGAGGTCAAAAGACTTGGTTCCTATTTACGAGTATCTTCACCCTCCTAGATTCATACAAACAAGTTCTCAACCTTCAGAAGGAAATAACGGACAAATGCTGGATCAGAACGGCATGGACAAGACTAGCCAAAGTACTTCTGAGACGGCAATAGAAACCAAGGGTATCATTGTAAATAATGACGGTTTCAAAACACAGAAGACTCAACTTAAGAATGTACATAACACGGAGAGTTCGAAAATCGAGAGTCAAGTCAAGGTTGTAAATAATAACAAAGAAGGCCTTAAGATGGAGAATCATTTTGAAGACGAAGGTGATGAGTTCGATTAG 2604 43.78 MIGVEVRELVISLNWILIVLLYLFVGMKNDESQKQQQQQQQGVGPRSGRTNGFISNSFRAFSSYLRIVSSGASSVARSTASVASSIVDKDDDTNCDQVNWAGFDKLESEGCSARRVLLLGYQSGFQVWDVEEANNVRDLVSKHDGPVSFMQMLPRPALSRKSDDRLLESRPLLVLCADVSVSTGFNLQDGLSTPGNVAISNGLDVSNGSFSPTIVRFYSLRSQSYVHEVKFRSAAYCVRCSSRVVAISQAAQIHCFNSLSLEREYTILTNPIVTGYPGSGIGYGPLAVGPRWLAYSGSPTVTSNSGRVIPQHLTNSASLPGFSQNGGLVAHYAKESSKQLAAGIMSLGDMGYRKLSRYCSELLPDSNNISQSGTRLKANGTLNGHLTDSDNVGMVIVRDIVRRAVIAQFRAHKSPISALCFDPSGTLLVTASVHGHNINVFKIMPGRSGISSTSPATASCIHLYRLQRGLTNAVIRDISFSDDSNWIMISSSRGTSHLFTLNPIGGSVNFHSADPSFTAKNGGFGVTTEPPAHGQPTELGLIATGPPVTLSAVSRIRSRNNGWTSTVTCAAAAATGRISSLPGAIASSFHNCKIDDALYGDNGSLSKAKFHLLVFSPSGSMIQYALRISLDSSMMDLGGLNTAHEIAGLECDARLGVEAIQKWNICQKQNRREVEDNIDIYGDNKHFEVKEKPKISMDEKYHLYMSEAELQMHEQLTPLWANPELSFQSIQGDGIEVDAENKLGGEIEIERIPSLMIEVRSKDLVPIYEYLHPPRFIQTSSQPSEGNNGQMLDQNGMDKTSQSTSETAIETKGIIVNNDGFKTQKTQLKNVHNTESSKIESQVKVVNNNKEGLKMENHFEDEGDEFD 867
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 446159 451354 + Conep09aG0010300.1 Cone9ag0103 444266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0103 867 MobiDBLite consensus disorder prediction 778 800 - -
Cone9ag0103 867 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 46 842 IPR045142 GO:0005737(PANTHER)|GO:0006914(InterPro)|GO:0042594(PANTHER)
Cone9ag0103 867 SMART WD40_4 457 500 IPR001680 GO:0005515(InterPro)
Cone9ag0103 867 SMART WD40_4 402 442 IPR001680 GO:0005515(InterPro)
Cone9ag0103 867 Pfam BCAS3, WD40 repeat 206 507 IPR048382 -
Cone9ag0103 867 Pfam BCAS3, WD40 repeat 100 182 IPR048382 -
Cone9ag0103 867 Gene3D - 96 520 IPR015943 GO:0005515(InterPro)
Cone9ag0103 867 SUPERFAMILY WD40 repeat-like 115 503 IPR036322 GO:0005515(InterPro)
Cone9ag0103 867 Pfam BCAS3 microtubule associated cell migration factor, C-terminal 650 685 IPR022175 -
Cone9ag0103 867 Pfam BCAS3 microtubule associated cell migration factor, C-terminal 688 769 IPR022175 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0103 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag0884 Cone-Chr11:7288387 Cone9ag0103 Cone-Chr9:446159 4.95E-147 dispersed
Cone3ag0739 Cone-Chr3:3815446 Cone9ag0103 Cone-Chr9:446159 1.75E-163 dispersed
Cone6ag0088 Cone-Chr6:427189 Cone9ag0103 Cone-Chr9:446159 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g430 Blo03g00582 Blo03g01436 . . . . . . . . . Cma09g00926 . Car09g00841 . Cpe06g00745 . . . . . . . . . . . . . . . Cone6ag0088 Cone9ag0103 . . . . . . . . . . Bpe11g00525 . . . . . . . . . Car16g00563 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005697 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39