Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0105 ATGGTAGGGACGGCGACCAACGGGAAGACCCGGCTATCCTTTTCACCCGTCAAAAACGGCTTCGGCCAAGATTTGGGTCTGAACAGTGCTCCGACGAGCTATGCTGGTTCGGAATGCGGTGGCATTGAGTTCACTAGAGAAGATGTTGAAGCTTTGTTGAATGAGAAAGTCAGGAGGAAGGACAAGTTTAACCTTAAGGAAAAATGTGACAACATGGTGGAATACATTAGAAGGCTTAAGCTATGCATCAAATGGTTCCAAGAGCTTGAGTCTAGCTACTTATCGGAGCAGGAGAAGCTACGGGATAATATGGAATCGGCCGAGTTGAAGTTCACCGAAATGGAGATTCTATTGAGGAATAAGGATGAAGAATTGAATACGATCATTGCAGAACTAAGAAGGAATTATTCTTCTTTACAAGACAAATTCATAAAAGAAGAATCAGAGAAGTTGGATGCAATTGACTCACTTGGTAAAGAGAAAGAGGCAAGATTGAACATCGAGAGGTCACAAACTTCTCTTTTAGAAGAGCTTGGAAGGGCTCAAAGAGAGCTCTCAAGTGCTAATCAAAAGATATCATCACTAAACGAAATGTACAAGCGCTTACAGGACTACATAACCAGTTTACAACAGTATAACAGCAAACTTCACACAGAGCTTTCAACCGTTGAAGATGATCTGAAACGCATAGAGAAAGAGAAGGGCTCCATGGTTGAGGATCTTAGCTTGCTAAGGGGTCGACTTACTCTCTCTAAAGCATCTCAAGAAGAAGCTACAAAGGAAAAGGATGCATTGGTGAATGAAGTTTCATGCCTAAGAGGGGAACTACAACAAGTGAGGGAAGATCGAGATCGTCACCTGTCACTTGTGCAGTCATTAACAGCTGAGGTAGTCAAGTACAAGGAGTCTACAGAAAAATCCAGCGCTGAGTTGGAAGATCTGAGAACAAAAACAAATGAGCTAGAGGCGACTTGTTCTTTGCAAAGTAACCATCTAAAGACATTACAGAATCATCTTTCAGCAGCAGAAGACAAGCTTCAGGTATCTGATTTATCGGTATTGGAGACAAGAACAGAATATGAAGAACAAAAGAAACTTATAATGGAGTTGCAAAATCGCCTTGCAGATGCAGAGAATAAGCTTACAGAAGGCGAGAAGCTACGAAAAAAACTTCACAATACCATATTGGAACTAAAAGGAAACATACGAGTATTCTGTAGAGTGCGGCCATTGTTGCCTGATGAGGTTTTTAGTTCTGATGGGAAGTTTATCTCCTATCCCACATCAGTAGAGGCTCTTGGAAGAGGAATTGATTTAACTCAAAGTGGCCAAAGACATTCTTTCTCATTTGACAGAGTTTTTATGCCCGACGCAACACAAGAGGATGTCTTTGTGGAAATTTCACAGCTCGTTCAAAGTGCACTAGATGGTTATAAGGTTTGTATCTTTGCCTACGGTCAGACCGGTTCGGGCAAGACTTATACCATGATGGGCAGGCCAGGGCTCATAGAGGAAAAAGGTCTGATACCACGTTCATTAGAACAAATATTTCAGACCAGGCAATTTCTTCAGCCTCAAGGTTGGAAATACGAAATGCAGGTGTCAATGTTGGAAATATATAACGAAACAATTCGAGATTTGCTTTCAACAAATCGGTCATCTTCAGATGTGTCACGATCTGAGCCAGGCAGTGCCGGGAAGCAGTTTGCAATCAAACATGATCCGACAGGTAATACGCATGTCTCTGATCTAACGGTTGTGGATGTTCGAAGTGCTAAAGAGGTCTCCTATCTTTTAGATCAGGCTGCTCGTAGCAGGTCTGTTGGTAAAACCCAAATGAACGAGCAATCTTCAAGAAGTCATTTTGTGTTCACGCTCCGAATATTTGGTGTTAATGAGAGCACTGAGCAACAAGTACAAGGTGTTCTGAATCTAATCGATCTTGCTGGAAGTGAGCGACTTTCTAAAAGCGGATCAACAGGGGACCGATTGAAAGAAACTCAAGCTATCAATAAAAGTTTATCATCCTTAAGCGATGTAATATTTGCCTTGGCAAAGAAGGAAGAGCATGTACCATTTAGAAACTCCAAGCTCACTTATCTTCTTCAGCCATGTCTTGGTGGAGATTCAAAGACCTTGATGTTTGTAAACATCTCTCCGGACCCCACGTCAACAGGTGAGTCACTCTGCTCCCTGCGGTTTGCATCTCGGGTCAATGCTTGTGAGATCGGTACTCCTCGGCGTCAGACCAATATGCGGCCAACAGAATCACGATTAAGCTACGGTTGA 2289 42.55 MVGTATNGKTRLSFSPVKNGFGQDLGLNSAPTSYAGSECGGIEFTREDVEALLNEKVRRKDKFNLKEKCDNMVEYIRRLKLCIKWFQELESSYLSEQEKLRDNMESAELKFTEMEILLRNKDEELNTIIAELRRNYSSLQDKFIKEESEKLDAIDSLGKEKEARLNIERSQTSLLEELGRAQRELSSANQKISSLNEMYKRLQDYITSLQQYNSKLHTELSTVEDDLKRIEKEKGSMVEDLSLLRGRLTLSKASQEEATKEKDALVNEVSCLRGELQQVREDRDRHLSLVQSLTAEVVKYKESTEKSSAELEDLRTKTNELEATCSLQSNHLKTLQNHLSAAEDKLQVSDLSVLETRTEYEEQKKLIMELQNRLADAENKLTEGEKLRKKLHNTILELKGNIRVFCRVRPLLPDEVFSSDGKFISYPTSVEALGRGIDLTQSGQRHSFSFDRVFMPDATQEDVFVEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGLIEEKGLIPRSLEQIFQTRQFLQPQGWKYEMQVSMLEIYNETIRDLLSTNRSSSDVSRSEPGSAGKQFAIKHDPTGNTHVSDLTVVDVRSAKEVSYLLDQAARSRSVGKTQMNEQSSRSHFVFTLRIFGVNESTEQQVQGVLNLIDLAGSERLSKSGSTGDRLKETQAINKSLSSLSDVIFALAKKEEHVPFRNSKLTYLLQPCLGGDSKTLMFVNISPDPTSTGESLCSLRFASRVNACEIGTPRRQTNMRPTESRLSYG 762
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 455957 460243 - Conep09aG0010500.1 Cone9ag0105 444268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0105 762 ProSitePatterns Kinesin motor domain signature. 641 652 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cone9ag0105 762 ProSiteProfiles Kinesin motor domain profile. 401 741 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag0105 762 CDD KISc_C_terminal 399 743 - -
Cone9ag0105 762 Coils Coil 304 324 - -
Cone9ag0105 762 Gene3D Kinesin motor domain 347 743 IPR036961 -
Cone9ag0105 762 FunFam Kinesin-like protein 347 743 - -
Cone9ag0105 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 358 739 IPR027417 -
Cone9ag0105 762 Coils Coil 171 205 - -
Cone9ag0105 762 Coils Coil 213 233 - -
Cone9ag0105 762 Coils Coil 255 296 - -
Cone9ag0105 762 Coils Coil 97 149 - -
Cone9ag0105 762 PRINTS Kinesin heavy chain signature 691 712 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag0105 762 PRINTS Kinesin heavy chain signature 642 660 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag0105 762 PRINTS Kinesin heavy chain signature 477 498 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag0105 762 PRINTS Kinesin heavy chain signature 611 628 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag0105 762 MobiDBLite consensus disorder prediction 551 576 - -
Cone9ag0105 762 Pfam Kinesin motor domain 407 740 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag0105 762 PANTHER KINESIN-LIKE PROTEIN KLP-3 252 751 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cone9ag0105 762 SMART kinesin_4 399 749 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cone9ag0105 762 Coils Coil 353 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0105 K27887 - - csv:101215636 1145.57
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0108 Cone-Chr1:593308 Cone9ag0105 Cone-Chr9:455957 2.21E-284 dispersed
Cone9ag0003 Cone-Chr9:24355 Cone9ag0105 Cone-Chr9:455957 1.40E-80 dispersed
Cone9ag0105 Cone-Chr9:455957 Cone9ag1446 Cone-Chr9:10725462 6.63E-49 dispersed
Cone5ag1761 Cone-Chr5:12539718 Cone9ag0105 Cone-Chr9:455957 1.79E-283 wgd
Cone6ag0089 Cone-Chr6:432907 Cone9ag0105 Cone-Chr9:455957 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g417 Blo03g00584 . Bda07g00337 . . . . . . . Cma01g01154 Cma09g00922 . Car09g00838 . Cpe06g00742 Cpe02g00747 Bhi09g01950 . . . . . . . . . . . . . Cone6ag0089 Cone9ag0105 . . Lsi04g01248 . . . . . . . Bpe11g00523 . . Bma14g00358 . Cmo01g01207 Cmo09g00919 . . . Car16g00566 . . . . . . . . . Cla05g01542 Cam05g1650 Cec05g1655 Cco05g1694 Clacu05g1643 Cmu05g1538 Cre05g1648 . . . Cme04g00801