Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0108 ATGCCAACAGTTTGGTTCTCTTTAAAGAAGTCATTGCATTGCAAATCAGAGCCATCAGAAGTTCATGACCCAAAAGCTGGTAACAAGCATTTGAGCTCAATCCTAACCAAAAAGGCAGCGAGGTCAGGCTGTTCAAGGTCTATAGCAAATCTAAGAGATGTCATCCATGGAAGTAAACGACATCTCGAAAAGCCACATAGTTGCAGCCCAAGATCTATTGGAAGCAGTGAATTTCTCAACCCTATTACACATGAAGTCATTCTAAGCAACTCTAGGTGTGAACTCAAAGTCACTAGCTTACTCGGTGGCTTACAAGAAGGCGGAGGCGGTTATGGTGGCAGTTCAACTTTCGAGGGTATGTTAAAGCCCGGAACACCGGGGCCAGGGCTGAACCCGGCAATGGACTATAACAAGCCCTCTTCAACTCCCTCAAGGAGGTTCCCTTTTCTAATGTCAGATAAAGAAGGGTCTAATACCACTGCTACTAGTAGGTTTGGTGGTTCTGCTAAGTATAATAGTTCAAGCAAGAGGGCCTCTCTTGAAACAGAAGCTAATAGTAGCCTTAATGGAGCTGGATCATCCTCTTCTTCTTCAATCACTTGTCACAAATGTGGAGAGCAGTTTAGCAAATGGGAAGTTGCAGAAGCTCATCATCTCTCCAAACATGCTGTTACTGAACTTGTGGAGGGAGATTCTTCGAGGAAAATTGTGGAAATAATATGCCGGACAAGCTGGTTAAAGTCCGAGAATCATTGCAGGCCAATAGAGAGGGTGTTAAAAGTACACAACATGCAAAGAACTCTAGCTAGATTTGAGGAATACAGGGAGATGGTTAAAAGCAAAGCGAGCAAGCTTCCAAAGAAACATCCTCGTTGCATTGCCGATGGGAACGAGCTGTTGCGGTTTTACGGCACGACCGCCGGCTGCTTGTTGGGCCTAAACGGGTCAGCCAGTGTTTGCATATCAGAAAAATGTTGTGTTTGTCGGATTATACGAAACGGGTTTTCGGTAAAAAATGAGTTGAAGGAAGGGGTAGGGATTTTTACGACCTCTACCAGCGGGAGAGCGTTTGAATCGATCGAAGTAGTTGAAGGGGATTCTTGTTCTGTAAGAAAGGCTTTGATAGTTTGTAGAGTGATTGCTGGAAGAGTTCATAGGCCTTTGGAGAATATACAGGAAATGGTTGGCCAAGTTGGGTTTGATTCATTGGCCGGTAAAATCGGTATTTATTCCAATACCGAGGAGCTTTATTTGCTCAATCCAAGAGCTCTGCTTCCTTGCTTTGTGGTCATTTGCAAATGCTGA 1305 44.29 MPTVWFSLKKSLHCKSEPSEVHDPKAGNKHLSSILTKKAARSGCSRSIANLRDVIHGSKRHLEKPHSCSPRSIGSSEFLNPITHEVILSNSRCELKVTSLLGGLQEGGGGYGGSSTFEGMLKPGTPGPGLNPAMDYNKPSSTPSRRFPFLMSDKEGSNTTATSRFGGSAKYNSSSKRASLETEANSSLNGAGSSSSSSITCHKCGEQFSKWEVAEAHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENHCRPIERVLKVHNMQRTLARFEEYREMVKSKASKLPKKHPRCIADGNELLRFYGTTAGCLLGLNGSASVCISEKCCVCRIIRNGFSVKNELKEGVGIFTTSTSGRAFESIEVVEGDSCSVRKALIVCRVIAGRVHRPLENIQEMVGQVGFDSLAGKIGIYSNTEELYLLNPRALLPCFVVICKC 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 469629 471300 + Conep09aG0010800.1 Cone9ag0108 444271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0108 434 Gene3D - 223 433 - -
Cone9ag0108 434 ProSitePatterns Zinc finger C2H2 type domain signature. 201 222 IPR013087 -
Cone9ag0108 434 FunFam C2H2-like zinc finger protein 223 433 - -
Cone9ag0108 434 MobiDBLite consensus disorder prediction 122 176 - -
Cone9ag0108 434 SUPERFAMILY ADP-ribosylation 224 433 - -
Cone9ag0108 434 MobiDBLite consensus disorder prediction 135 176 - -
Cone9ag0108 434 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 433 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone7ag1881 Cone-Chr7:12127236 Cone9ag0108 Cone-Chr9:469629 1.03E-61 dispersed
Cone8ag0380 Cone-Chr8:2309132 Cone9ag0108 Cone-Chr9:469629 2.39E-26 dispersed
Cone14ag1118 Cone-Chr14:9313725 Cone9ag0108 Cone-Chr9:469629 2.68E-178 wgd
Cone15ag1134 Cone-Chr15:9227314 Cone9ag0108 Cone-Chr9:469629 3.66E-97 wgd
Cone6ag0092 Cone-Chr6:446661 Cone9ag0108 Cone-Chr9:469629 7.54E-299 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0108 - - - 0.0