Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0109 ATGAAAGGGGAGTCATCTGGGCTGATCATTGGGATTTCGATAGGGGTTGTGATCGGAATTCTTTTGGCCGTTTTCAGTCTGTTTTGCTTTAGGTATCACAGGAAAAGATCCCAGATAGGGAATAGCAGTTCAAGGAGAGCAGCCACTATTCCTATTCGTACTAATGGCGCTGATTCTTGTACTATATTATCTGACTCAACCTTGGGTCCAGAATCACCGGTTAAGTCTGGTAGGAGTTCCATGACCTTCTGGCTTGAAGGGTTTAAGAGAAGTAATGTCGTCTCAGCTTCTGGAATACCCGAGTATTCTTACAAGGATCTGCAAAAGGCTACTAGTAATTTTACGACTATCATAGGACAAGGGGCATTTGGTCCAGTTTATAAAGCTCAGATGTCAACTGGGGAGACTGTTGCTGTTAAGGTTCTTGCTACTGATTCTAAGCAAGGGGAGAGAGAGTTCCAGACAGAGGTTATGTTGTTAGGACGGTTGCATCATAGAAACCTTGTGAATTTGGTTGGGTATTGTGCTGAAAGAAGCCAAAATATGCTTATATATGTCTACATGAGCAAGGGCAGCTTGGCTTCTCATTTGTACAGTGAAGAGAATGAACCGTTGAGCTGGGATATGCGGGTTCATGTAGCATTAGATGTGGCACGAGGCTTGGAATATCTTCATGATGGTGCAGTTCCTCCAGTAATACACCGAGATATCAAGTCTTCCAATATTCTGCTCGATCATGCCTTGAGAGCACGGGTTGCTGATTTTGGGCTTTCAAGAGAAGATATGATGGATAGAAATGCAGCTAATATTCGCGGAACATTTGGGTATCTTGACCCAGAATATATATCTACAAGGGTCTTCACTAAGAAAAGTGATGTTTACAGTTTTGGAGTATTGCTCTTTGAGCTTATAGCTGGTAGAAACCCTCAACAAGGATTAATGGAATATGTTGAGCTCGCAGCCATGAATACAGAGGGGAAAGTGGGGTGGGAAGAAATAGTAGATGCCCGTCTAGATGGAAATTTCGACGCGCAAGAGCTGAATGAGGTGGCGGCTCTTGCATATAAATGCATAAACCGAAACCCGAGAAAAAGGCCTGTTATGAGGGACATTGTTCAAGTTTTGTCGCGGATTATAAAACTGAGGGTCAGTAAAAGACATCATAGGAAGTCTTTGTCATCTACAACGGATGATGTTGCTATCGATATGGACCAAGCAGATTCTAAGACTTCTTTGACTGAGCACAGACGAGAACTGTCTATGGACAGTACAGCTGAGGGATCTGAAGTTTGA 1293 43.08 MKGESSGLIIGISIGVVIGILLAVFSLFCFRYHRKRSQIGNSSSRRAATIPIRTNGADSCTILSDSTLGPESPVKSGRSSMTFWLEGFKRSNVVSASGIPEYSYKDLQKATSNFTTIIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEREFQTEVMLLGRLHHRNLVNLVGYCAERSQNMLIYVYMSKGSLASHLYSEENEPLSWDMRVHVALDVARGLEYLHDGAVPPVIHRDIKSSNILLDHALRARVADFGLSREDMMDRNAANIRGTFGYLDPEYISTRVFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDARLDGNFDAQELNEVAALAYKCINRNPRKRPVMRDIVQVLSRIIKLRVSKRHHRKSLSSTTDDVAIDMDQADSKTSLTEHRRELSMDSTAEGSEV 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 472426 475620 - Conep09aG0010900.1 Cone9ag0109 444272

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0109 430 Gene3D Transferase(Phosphotransferase) domain 1 188 402 - -
Cone9ag0109 430 FunFam calcium/calmodulin-regulated receptor-like kinase 1 188 397 - -
Cone9ag0109 430 SUPERFAMILY Protein kinase-like (PK-like) 100 386 IPR011009 -
Cone9ag0109 430 MobiDBLite consensus disorder prediction 403 430 - -
Cone9ag0109 430 CDD STKc_IRAK 118 378 - -
Cone9ag0109 430 Gene3D Phosphorylase Kinase; domain 1 83 187 - -
Cone9ag0109 430 PANTHER OS01G0750732 PROTEIN 9 409 IPR050885 -
Cone9ag0109 430 SMART serkin_6 112 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0109 430 ProSiteProfiles Protein kinase domain profile. 112 379 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0109 430 MobiDBLite consensus disorder prediction 403 424 - -
Cone9ag0109 430 FunFam Calcium/calmodulin-regulated receptor-like kinase 1 86 187 - -
Cone9ag0109 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0109 430 Pfam Protein tyrosine and serine/threonine kinase 114 375 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0109 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0109 Cone-Chr9:472426 Cone6ag1615 Cone-Chr6:12479507 2.03E-75 dispersed
Cone16ag0526 Cone-Chr16:7279714 Cone9ag0109 Cone-Chr9:472426 1.11E-126 transposed
Cone6ag0093 Cone-Chr6:449466 Cone9ag0109 Cone-Chr9:472426 2.82E-289 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g406 Blo03g00588 . Bda07g00333 . . . . . . . Cma01g01158 Cma09g00918 . Car09g00834 . Cpe06g00738 Cpe02g00744 Bhi09g01956 . . . . Mch11g1145 . . . . . . . . . Cone9ag0109 . . Lsi04g01252 . Chy04g01023 . . . . . Bpe11g00519 . . Bma14g00362 . Cmo01g01212 Cmo09g00912 Cma04g01014 . Car04g00865 Car16g00570 Cpe14g00713 Cpe01g00836 . . . . . . . Cla05g01548 . . . . . . . . . Cme04g00791
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83152 PF00076 RRM_1 2.90E-14 CL0221 Cone PK