Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0110 ATGGACTCGCACCAGATTTTCAGATTCAGTGTTAGTGGCGCAGAAGTTACATACAACACATCTTCATATCCCACTGTTCCCTCTATACCAAATCGTTTACTCGGATCATTGAAGTTCAACAACGGAAACTCACCCAATTCGCCCATTTTATCTCCCTTCGATTTGAATACTCATACGACACTAAGCGATAGTCAGGAACAGCTTAGCTCCACGGAGAATCTCTCCAGATTCAGCCCTTCTTGTGACTCGCTGATTGAAACCAACAACTACCTAATACACCCTTTGGCTGATAACTCCCAAGTCAACAACCCACAGCTCTACTCAGGTGGGGCCGGTATTTTGGATAATGCTGACCAGAGTCAGTCCCGGATCATAAGTCTTGCATTGCAGCAATTGGAGACAGCTCTTATGGGGCCAGATGGCGAAGAAGAAACCATCAGCAAACCGGAAACTTCTTTCGGGGAAAGTAGCCAGCCACAACAACAAATACTAGGCCAGGGCTCGAGGATGTGGAGCGCCCACAACATTCAACCTCAGACGTCCTTTGTTTCTAGACATAGGCAGCAATCGGCTGAAGAAGCGGTTCATATCGAGAAACGGCAAAAATCAATCTCTGAAGCAGCACCATTACAGGCCGGATTTCCATCAAGCAATAATCTAAAGCAATTGCTTATAGCTTGTGCTAAATCTCTTTCGGAAAACAACATGGAAGATTTCGAAAAGCTGGTTGAAAAGGCTAGAGGGGCCGTATCAATCAGTGGAGAACCAATCCAACGGCTAGGAGCTTACATGGTGGAAGGCTTGGTTGCTAGGAAAGAGGCATCAGGCACGAACATCTACCGTGCCCTGAGGTGTAGAGAGCCACAAAGCTCCGACTTGCTCTCATACATGCACATCTTATACGAAATCTGCCCGTACTTGAAATTCGGTTACATGGCAGCTAATGGTGCTATTGCTGAGGCGTGCAAAAATGAGGACCGAATCCACATAGTAGATTTCCAAATCGCTCAAGGGACACAATGGACCACTCTCCTTCAAGCACTTGCTGCTAGACCCAGAGGGGCCCCATGTGTGAGGATTACGGGGATTGATGATCCCGTTTCGAAATATGCACGGGGTGATGGATTAGAGCTAGTAGGAAAGCGTTTGGCTGCGATTTCGGAAAAATTCAATATCCCGGTAGAGTTTCATGGGGTCCCAGTTTTTGCCCCAGATGTCACTTCCGGAATGCTTGATGTCCGGCCGGGAGAAGCTCTGGCCGTTAACTTTTCTCTCCAATTACATCACACACCGGATGAGAGTGTAGATGTGAATAATCCAAGAGACGGGCTTTTAAGAATGGTGAAGTCTTTATCGCCTAAAGTGGTCACTTTAGTTGAGCAAGAATCAAATGCAAACACGACCCCTTTCTTCTACAGGTTTGTGGAAACTTTAGAGTACTATCTAGCAATGTTCGAGTCGATTGACGTGACTCTTCCGAGGAACAGCAAGAAGAGGATTAAAGTGGAGCAGCATTGTCTGGCTAGGGACATGGTTAATGTTATAGCTTGTGAGGGGAAAGAGAGGGTAGAGAGGCACGAGCTTTTCGGGAAGTGGAAATCTAGGTTGACTATGGCTGGGTTCAGACAGTATCCATTGAGTTCTTACGTGAATTCGGTTATAAGGAGTCTGTTGAGGTGTTACTCGGAACATTACACGCTTGTTGAGAAGGATGGGGCGATGCTCTTGGGATGGAAGGATCGGAATCTGATTTCTGCTTCTGCCTGGAACTAA 1773 46.64 MDSHQIFRFSVSGAEVTYNTSSYPTVPSIPNRLLGSLKFNNGNSPNSPILSPFDLNTHTTLSDSQEQLSSTENLSRFSPSCDSLIETNNYLIHPLADNSQVNNPQLYSGGAGILDNADQSQSRIISLALQQLETALMGPDGEEETISKPETSFGESSQPQQQILGQGSRMWSAHNIQPQTSFVSRHRQQSAEEAVHIEKRQKSISEAAPLQAGFPSSNNLKQLLIACAKSLSENNMEDFEKLVEKARGAVSISGEPIQRLGAYMVEGLVARKEASGTNIYRALRCREPQSSDLLSYMHILYEICPYLKFGYMAANGAIAEACKNEDRIHIVDFQIAQGTQWTTLLQALAARPRGAPCVRITGIDDPVSKYARGDGLELVGKRLAAISEKFNIPVEFHGVPVFAPDVTSGMLDVRPGEALAVNFSLQLHHTPDESVDVNNPRDGLLRMVKSLSPKVVTLVEQESNANTTPFFYRFVETLEYYLAMFESIDVTLPRNSKKRIKVEQHCLARDMVNVIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRCYSEHYTLVEKDGAMLLGWKDRNLISASAWN 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 478390 481250 + Conep09aG0011000.1 Cone9ag0110 444273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0110 590 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 187 589 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone9ag0110 590 MobiDBLite consensus disorder prediction 150 167 - -
Cone9ag0110 590 MobiDBLite consensus disorder prediction 139 167 - -
Cone9ag0110 590 Pfam GRAS domain family 220 589 IPR005202 -
Cone9ag0110 590 ProSiteProfiles GRAS family profile. 211 590 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0110 K27748 - - vvi:100267541 819.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag0045 Cone-Chr1:251397 Cone9ag0110 Cone-Chr9:478390 8.37E-137 dispersed
Cone7ag1079 Cone-Chr7:8200464 Cone9ag0110 Cone-Chr9:478390 9.84E-55 dispersed
Cone7ag1080 Cone-Chr7:8204358 Cone9ag0110 Cone-Chr9:478390 5.00E-49 dispersed
Cone7ag1483 Cone-Chr7:10404947 Cone9ag0110 Cone-Chr9:478390 4.37E-118 dispersed
Cone9ag0110 Cone-Chr9:478390 Cone9ag0274 Cone-Chr9:1182967 7.02E-51 dispersed
Cone6ag0094 Cone-Chr6:455288 Cone9ag0110 Cone-Chr9:478390 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g405 Blo03g00589 . Bda07g00332 . . . . . . . Cma01g01159 Cma09g00916 . Car09g00833 Sed07g2646 . Cpe02g00742 Bhi09g01957 Tan01g4496 Cmetu04g0683 . Hepe01g1320 Mch11g1144 . . . . . . . . . Cone9ag0110 . . Lsi04g01253 . Chy04g01026 . . . . . Bpe11g00518 . . Bma14g00364 . Cmo01g01214 Cmo09g00910 . . . Car16g00572 . . . . . . . . . Cla05g01549 . . Cco05g1701 Clacu05g1649 Cmu05g1543 Cre05g1656 . . . Cme04g00788
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone19ag1332 . 70 750 GRAS Transcription Factor Family AT2G37650 54.0 2.1e-200 696.4
Cone10ag0315 . 70 742 GRAS Transcription Factor Family AT2G37650 54.7 2.2e-197 686.4
Cone3ag0347 . 107 287 GRAS Transcription Factor Family AT2G37650 56.7 1.2e-57 222.2
Cone5ag0258 . 243 700 GRAS Transcription Factor Family AT3G46600 51.2 2.9e-120 429.9
Cone4ag1048 . 295 669 GRAS Transcription Factor Family AT3G46600 54.9 2.0e-118 423.7
Cone7ag1079 . 258 636 GRAS Transcription Factor Family AT3G46600 51.5 1.5e-108 391.0
Cone12ag0161 . 62 476 GRAS Transcription Factor Family AT3G49950 57.3 3.3e-129 459.1
Cone3ag0347 . 107 288 GRAS Transcription Factor Family AT1G07530 50.7 8.7e-51 199.5
Cone12ag0754 . 85 584 GRAS Transcription Factor Family AT4G36710 50.2 7.8e-122 434.9
Cone9ag0274 . 50 452 GRAS Transcription Factor Family AT5G41920 68.0 2.9e-146 515.8
Cone6ag0242 . 79 456 GRAS Transcription Factor Family AT5G41920 69.8 8.5e-146 514.2
Cone4ag1007 . 314 701 GRAS Transcription Factor Family AT5G41920 54.7 1.0e-111 401.0
Cone7ag1134 . 290 679 GRAS Transcription Factor Family AT5G41920 53.9 3.4e-110 396.0
Cone15ag0066 . 36 626 GRAS Transcription Factor Family AT5G52510 54.7 3.6e-151 532.7
Cone14ag0063 . 66 628 GRAS Transcription Factor Family AT5G52510 54.8 1.9e-147 520.4
Cone9ag1542 . 1 628 GRAS Transcription Factor Family AT5G66770 57.5 5.4e-178 621.7
Cone6ag1617 . 1 621 GRAS Transcription Factor Family AT5G66770 59.3 6.0e-177 618.2
Cone10ag1246 . 40 531 GRAS Transcription Factor Family AT1G50600 61.0 2.9e-162 569.3
Cone3ag1294 . 42 531 GRAS Transcription Factor Family AT1G50600 60.8 1.6e-160 563.5
Cone14ag1207 . 25 394 GRAS Transcription Factor Family AT1G50600 68.2 2.1e-149 526.6
Cone1ag0045 . 96 533 GRAS Transcription Factor Family AT1G50600 56.0 4.8e-133 472.2
Cone6ag0094 . 219 589 GRAS Transcription Factor Family AT1G50600 61.7 6.2e-133 471.9
Cone9ag0110 . 216 589 GRAS Transcription Factor Family AT1G50600 62.0 8.2e-133 471.5
Cone5ag1816 . 117 554 GRAS Transcription Factor Family AT1G50600 53.8 5.5e-129 458.8
Cone7ag1483 . 1 339 GRAS Transcription Factor Family AT1G50600 53.6 1.9e-97 354.0
Cone15ag1224 . 1 164 GRAS Transcription Factor Family AT1G50600 72.1 6.0e-67 252.7
Cone8ag0328 . 1 626 GRAS Transcription Factor Family AT1G63100 51.2 1.5e-163 573.9
Cone13ag0741 . 36 550 GRAS Transcription Factor Family AT1G14920 70.6 1.3e-202 703.4
Cone19ag0747 . 39 550 GRAS Transcription Factor Family AT1G14920 71.2 2.7e-200 695.7
Cone9ag0417 . 26 594 GRAS Transcription Factor Family AT1G14920 63.3 4.9e-194 674.9
Cone6ag0390 . 29 597 GRAS Transcription Factor Family AT1G14920 62.3 1.4e-193 673.3
Cone2ag0475 . 55 574 GRAS Transcription Factor Family AT1G14920 58.9 4.6e-168 588.6
Cone16ag0528 . 45 559 GRAS Transcription Factor Family AT1G14920 60.0 1.0e-167 587.4
Cone13ag0741 . 1 551 GRAS Transcription Factor Family AT1G66350 58.5 2.5e-171 599.4
Cone2ag0475 . 55 574 GRAS Transcription Factor Family AT1G66350 61.5 3.3e-171 599.0
Cone19ag0747 . 1 551 GRAS Transcription Factor Family AT1G66350 58.8 1.3e-170 597.0
Cone16ag0528 . 47 559 GRAS Transcription Factor Family AT1G66350 61.5 4.0e-169 592.0
Cone9ag0417 . 1 595 GRAS Transcription Factor Family AT1G66350 53.7 2.1e-162 569.7
Cone6ag0390 . 32 598 GRAS Transcription Factor Family AT1G66350 55.6 4.0e-161 565.5
Cone1ag0630 . 224 752 GRAS Transcription Factor Family AT1G07520 53.0 2.4e-148 523.1
Cone5ag1134 . 221 749 GRAS Transcription Factor Family AT1G07520 54.5 8.5e-146 514.6
Cone7ag1079 . 134 636 GRAS Transcription Factor Family AT1G07520 51.1 3.8e-138 489.2
Cone10ag1246 . 19 531 GRAS Transcription Factor Family AT5G48150 64.1 7.7e-186 647.5
Cone3ag1294 . 109 531 GRAS Transcription Factor Family AT5G48150 72.1 3.4e-181 632.1
Cone14ag1207 . 1 394 GRAS Transcription Factor Family AT5G48150 62.8 6.6e-145 511.5
Cone9ag0110 . 216 590 GRAS Transcription Factor Family AT5G48150 65.2 2.2e-140 496.5
Cone6ag0094 . 219 590 GRAS Transcription Factor Family AT5G48150 64.9 4.9e-140 495.4
Cone1ag0045 . 82 533 GRAS Transcription Factor Family AT5G48150 56.0 1.0e-137 487.6
Cone5ag1816 . 103 554 GRAS Transcription Factor Family AT5G48150 53.6 5.4e-131 465.3
Cone7ag1483 . 1 334 GRAS Transcription Factor Family AT5G48150 58.4 1.9e-107 387.1
Cone15ag1224 . 1 165 GRAS Transcription Factor Family AT5G48150 71.1 8.0e-66 248.8
Cone13ag0741 . 38 558 GRAS Transcription Factor Family AT2G01570 68.3 5.2e-205 711.4
Cone19ag0747 . 41 550 GRAS Transcription Factor Family AT2G01570 68.7 4.9e-203 704.9
Cone9ag0417 . 30 594 GRAS Transcription Factor Family AT2G01570 62.4 4.1e-194 675.2
Cone6ag0390 . 33 597 GRAS Transcription Factor Family AT2G01570 60.8 7.1e-194 674.5
Cone2ag0475 . 57 574 GRAS Transcription Factor Family AT2G01570 59.3 8.4e-171 597.8
Cone16ag0528 . 49 559 GRAS Transcription Factor Family AT2G01570 58.7 3.0e-168 589.3
Cone13ag0741 . 1 551 GRAS Transcription Factor Family AT1G66350 58.5 2.5e-171 599.4
Cone2ag0475 . 55 574 GRAS Transcription Factor Family AT1G66350 61.5 3.3e-171 599.0
Cone19ag0747 . 1 551 GRAS Transcription Factor Family AT1G66350 58.8 1.3e-170 597.0
Cone16ag0528 . 47 559 GRAS Transcription Factor Family AT1G66350 61.5 4.0e-169 592.0
Cone9ag0417 . 1 595 GRAS Transcription Factor Family AT1G66350 53.7 2.1e-162 569.7
Cone6ag0390 . 32 598 GRAS Transcription Factor Family AT1G66350 55.6 4.0e-161 565.5
Cone2ag0475 . 57 574 GRAS Transcription Factor Family AT3G03450 62.5 6.4e-173 604.7
Cone19ag0747 . 41 550 GRAS Transcription Factor Family AT3G03450 61.7 1.3e-170 597.0
Cone13ag0741 . 38 550 GRAS Transcription Factor Family AT3G03450 60.3 6.6e-170 594.7
Cone9ag0417 . 30 594 GRAS Transcription Factor Family AT3G03450 55.3 1.0e-162 570.9
Cone6ag0390 . 33 597 GRAS Transcription Factor Family AT3G03450 55.0 1.3e-162 570.5
Cone16ag0528 . 49 559 GRAS Transcription Factor Family AT3G03450 59.4 4.8e-160 562.0
Cone19ag0747 . 37 550 GRAS Transcription Factor Family AT5G17490 58.9 5.6e-158 555.1
Cone13ag0741 . 34 554 GRAS Transcription Factor Family AT5G17490 58.1 2.8e-157 552.7
Cone2ag0475 . 56 574 GRAS Transcription Factor Family AT5G17490 58.9 6.4e-154 541.6
Cone16ag0528 . 28 559 GRAS Transcription Factor Family AT5G17490 56.7 4.3e-150 528.9
Cone9ag0417 . 1 594 GRAS Transcription Factor Family AT5G17490 50.7 3.5e-144 509.2
Cone6ag0390 . 1 597 GRAS Transcription Factor Family AT5G17490 50.4 3.9e-143 505.8
Cone4ag1449 . 2 520 GRAS Transcription Factor Family AT1G21450 61.0 1.3e-179 627.1
Cone7ag1483 . 1 339 GRAS Transcription Factor Family AT1G21450 73.0 2.7e-140 496.5
Cone3ag1294 . 153 531 GRAS Transcription Factor Family AT1G21450 53.7 6.0e-116 415.6
Cone10ag1246 . 153 531 GRAS Transcription Factor Family AT1G21450 52.9 3.0e-115 413.3
Cone6ag0094 . 221 590 GRAS Transcription Factor Family AT1G21450 51.2 2.1e-108 390.6
Cone9ag0110 . 221 590 GRAS Transcription Factor Family AT1G21450 50.9 6.0e-108 389.0
Cone15ag1224 . 2 164 GRAS Transcription Factor Family AT1G21450 57.6 7.5e-50 196.1
Cone5ag0258 . 273 700 GRAS Transcription Factor Family AT5G59450 51.7 6.8e-123 438.7
Cone4ag1048 . 295 669 GRAS Transcription Factor Family AT5G59450 54.6 1.7e-121 434.1
Cone10ag0315 . 360 742 GRAS Transcription Factor Family AT5G59450 53.5 1.8e-120 430.6
Cone1ag0045 . 30 533 GRAS Transcription Factor Family AT4G17230 58.4 1.0e-159 560.8
Cone5ag1816 . 1 554 GRAS Transcription Factor Family AT4G17230 54.4 1.4e-156 550.4
Cone10ag1246 . 50 531 GRAS Transcription Factor Family AT4G17230 51.5 1.4e-132 470.7
Cone14ag1207 . 25 394 GRAS Transcription Factor Family AT4G17230 55.5 2.4e-116 416.8
Cone6ag0094 . 216 589 GRAS Transcription Factor Family AT4G17230 52.1 3.6e-112 402.9
Cone9ag0110 . 219 589 GRAS Transcription Factor Family AT4G17230 52.3 1.5e-110 397.5
Cone15ag1224 . 1 164 GRAS Transcription Factor Family AT4G17230 56.4 7.4e-49 192.6
Cone10ag1246 . 128 531 GRAS Transcription Factor Family AT2G04890 66.0 1.4e-156 550.1
Cone3ag1294 . 151 531 GRAS Transcription Factor Family AT2G04890 68.5 1.2e-152 537.0
Cone14ag1207 . 6 394 GRAS Transcription Factor Family AT2G04890 61.3 6.0e-139 491.5
Cone9ag0110 . 216 590 GRAS Transcription Factor Family AT2G04890 61.9 5.4e-132 468.4
Cone6ag0094 . 218 590 GRAS Transcription Factor Family AT2G04890 61.4 9.3e-132 467.6
Cone1ag0045 . 154 533 GRAS Transcription Factor Family AT2G04890 57.1 4.2e-116 415.6
Cone4ag1449 . 115 520 GRAS Transcription Factor Family AT2G04890 50.1 1.4e-111 400.6
Cone5ag1816 . 175 554 GRAS Transcription Factor Family AT2G04890 54.7 2.0e-110 396.7
Cone7ag1483 . 4 334 GRAS Transcription Factor Family AT2G04890 53.4 7.4e-97 351.7
Cone15ag1224 . 1 165 GRAS Transcription Factor Family AT2G04890 71.1 1.8e-66 250.8
Cone18ag0079 . 1 462 GRAS Transcription Factor Family AT1G50420 60.0 6.1e-159 558.1
Cone11ag1515 . 1 461 GRAS Transcription Factor Family AT1G50420 59.5 7.9e-159 557.8
Cone1ag1484 . 1 466 GRAS Transcription Factor Family AT1G50420 59.7 2.5e-152 536.2
Cone5ag0474 . 1 466 GRAS Transcription Factor Family AT1G50420 59.9 1.2e-151 533.9
Cone9ag1542 . 1 628 GRAS Transcription Factor Family AT3G50650 52.8 1.1e-148 524.2
Cone6ag1617 . 1 621 GRAS Transcription Factor Family AT3G50650 50.2 1.4e-148 523.9
Cone7ag1134 . 112 680 GRAS Transcription Factor Family AT3G54220 66.9 2.1e-186 649.8
Cone4ag1007 . 118 702 GRAS Transcription Factor Family AT3G54220 65.8 1.9e-184 643.3
Cone6ag0242 . 90 453 GRAS Transcription Factor Family AT3G54220 61.8 1.5e-128 457.6
Cone9ag0274 . 88 453 GRAS Transcription Factor Family AT3G54220 60.7 1.4e-126 451.1
Cone20ag0784 . 88 457 GRAS Transcription Factor Family AT3G54220 56.2 9.5e-115 411.8
Cone9ag1379 . 124 517 GRAS Transcription Factor Family AT4G37650 63.6 5.3e-148 521.9
Cone6ag1458 . 120 513 GRAS Transcription Factor Family AT4G37650 63.1 3.8e-146 515.8
Cone12ag0168 . 125 525 GRAS Transcription Factor Family AT4G37650 61.8 3.0e-143 506.1
Cone8ag0163 . 86 505 GRAS Transcription Factor Family AT4G37650 59.7 5.1e-143 505.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008964 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46764 None None None None Cone TF