Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0113 ATGGCTGCTGAAATCCTAGCTCCGGTTCCTCCTCCATCGAAAGTTGAATCGAAAGCCGAAATCAAGCGTCGCTCGGCCGGTTTCCATCCCAACCTTTGGGGCGAACATTTTCTCACATATTCACCCAAATCATTGGAAACTGATGAGAGAACACTAAAGAAACTGGAAGAACTAAAGGAACAAGTGAGGAAGTTGCTTGAGGCTCCGATTCTTGAGAATCCTTCGAAGAAACTGTACTTGATAAATAATCTGGAACGTTTAGGAGTCGCCTATCATTTCGAAGATAAGATTACTGAAGTTGTAAAGCAAATCTATGATCAGTATGTCGAACAAGAAAGGAAGGGTGAAGACAAGATTGATGATCTTTTCACCGTCGCTCTCCGTTTTAGATTGTTCAGGCAACAAAGTATCAATATTCCATCTGAAACACTCAGGAAGCATTTGAAGGATAGTGAAGGAAAATTCAAAGAATCCCTCGTAAGTGATGTGAAAGGGATGTTAAGCTTATATGAAGCCACAATTCTGAGGATCCATAATGAAGAAATATTGGAGGAAGCTTTCACTTTCACCACAACTCATCTTCAAAAGTATGTTGAATCATCACCCGGGCCGCTTGCTACGCAAGTTGTCCATGCCTTAAACCGGCCTCTTCGTCGGGGCATGCCGAGGCTCGAGGCCACCTACTACTTCACCTTCTATGAGCAAGACCCTTCCCATAGCAAACTTCTCTTAACCTTTGCCAAACTTGATTTCAATGTTGTGCAAAAACTCCATAAGAAAGAACTTGCTCATATAACACAATGGTGGAAAGACTTGGAAGTTGCAAAGGTGTTGCCATGGACTAGGAACAGAAATGTGGAGTGCTTCTTTTGGATTCAGGGAGTCTTCTTCGAACCCGAACATCTCCTCGGTAGAAGGTTCGTAACCAAGGTCATTGCTGTTACCTCCATGGTTGATGATCTGTACGACGTTTATGCTACTCTCGACGAGCTTGATCTCTTCACCAAGACTCTTGAAAGATGGGATATCAATGACAAGCATCTACTTCCAGAGTTCATGCAATTCATCTATCAGTCCCTGATGGATATTTTCAATGAGGCCGAAGAACTTTTGGCTCCCCGAGGACAAAAATTCCGGATCGATTACTTAAAAAAATTCGTAAGTTTATAA 1170 42.48 MAAEILAPVPPPSKVESKAEIKRRSAGFHPNLWGEHFLTYSPKSLETDERTLKKLEELKEQVRKLLEAPILENPSKKLYLINNLERLGVAYHFEDKITEVVKQIYDQYVEQERKGEDKIDDLFTVALRFRLFRQQSINIPSETLRKHLKDSEGKFKESLVSDVKGMLSLYEATILRIHNEEILEEAFTFTTTHLQKYVESSPGPLATQVVHALNRPLRRGMPRLEATYYFTFYEQDPSHSKLLLTFAKLDFNVVQKLHKKELAHITQWWKDLEVAKVLPWTRNRNVECFFWIQGVFFEPEHLLGRRFVTKVIAVTSMVDDLYDVYATLDELDLFTKTLERWDINDKHLLPEFMQFIYQSLMDIFNEAEELLAPRGQKFRIDYLKKFVSL 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 485071 486529 + Conep09aG0011300.1 Cone9ag0113 444276

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0113 389 Gene3D Farnesyl Diphosphate Synthase 30 386 IPR008949 -
Cone9ag0113 389 Pfam Terpene synthase, N-terminal domain 32 213 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Cone9ag0113 389 FunFam Isoprene synthase, chloroplastic 72 239 - -
Cone9ag0113 389 Coils Coil 45 68 - -
Cone9ag0113 389 Gene3D - 72 239 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Cone9ag0113 389 CDD Terpene_cyclase_plant_C1 23 385 IPR044814 GO:0010333(InterPro)|GO:0016102(InterPro)
Cone9ag0113 389 SUPERFAMILY Terpenoid synthases 239 386 IPR008949 -
Cone9ag0113 389 Pfam Terpene synthase family, metal binding domain 270 386 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Cone9ag0113 389 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 239 IPR008930 -
Cone9ag0113 389 PANTHER OS04G0344100 PROTEIN-RELATED 29 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0113 K15803 - - vvi:100232954 390.193
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0095 Cone-Chr6:460604 Cone9ag0113 Cone-Chr9:485071 5.45E-267 dispersed
Cone6ag0978 Cone-Chr6:5323332 Cone9ag0113 Cone-Chr9:485071 2.87E-143 dispersed
Cone8ag0062 Cone-Chr8:321876 Cone9ag0113 Cone-Chr9:485071 2.84E-69 dispersed
Cone8ag0063 Cone-Chr8:326578 Cone9ag0113 Cone-Chr9:485071 7.13E-70 dispersed
Cone9ag0111 Cone-Chr9:482145 Cone9ag0113 Cone-Chr9:485071 7.37E-06 proximal
Cone9ag0112 Cone-Chr9:482977 Cone9ag0113 Cone-Chr9:485071 1.20E-19 tandem
Cone1ag0110 Cone-Chr1:609680 Cone9ag0113 Cone-Chr9:485071 2.96E-51 wgd
Cone3ag1364 Cone-Chr3:32646924 Cone9ag0113 Cone-Chr9:485071 5.67E-68 wgd
Cone5ag1753 Cone-Chr5:12471746 Cone9ag0113 Cone-Chr9:485071 5.51E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g403 . . Bda07g00331 . . . . Bma13g00950 . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0113 . . . . . . Blo07g00921 . Bda05g00743 . . Bpe03g00808 . . . . . . Cma16g00830 . . . . . . . . . . . . . . . . . . Lsi05g00657 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337