Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0123 ATGGACGCAGTTTCATGTACTTTCATACTCGTCCTTTCTTGCTTCAAAATCTCAGCTGCTATTGAAATTGATTCCATTTCTCAATCACAAAACCTCACTGATGGAACCACCATGGTTTCCAGATCCGGTTTATTCGAACTCGGTTTCTTCAGTCCCGGAATTTCGAAAAACCGTTACCTAGGAATCTGGTACAAGAACATCTCAGTTCCAACTTATGTTTGGGTTGCAAACAGGGTTAATCCAATCAATGACTCATCTGGAACATTCATGATAGATAACCTAACCAATTCCCTTATCCTCACTCAGAACAACACTCTTGTCTGGTCAGCTAATTACTCATCCAAACAAGTTCAAAACCCGACCCTACAGCTGTTAGATTCCGGAAATCTCGTCTTAAAAGAGAAAGGAAATTCAGACGACAACAGCAATAGCAACTACTTATGGCAGAGCTTTGATTATCCTACTGATACTTTGTTGCCCGACATGAAGATTGGATGGGACTTTAGGACAAACTTAAACAGACGTTTGTCAGCTTGGACTAGTCCAGACGATCCCTCTCCTTCAAGCTTGACTATGGAAATGGAGAATAATAGCTACCCTGAACCGGCTATGTGGAACGGCTCGAAAGAGTATATGAGAAGCGGGCCATGGAATGGTATTACATACAGTGCAAAGCCAACTACAGCTCTCCCCATCATAATTTACAACTATGCCCATACCAAGGATGAGCTTTCCTTCGGCTATAAGCTAGTCAATCAGTCAATGATCGGCCGGATGATATTAAACCAATCCATGAACCGGAGAGAGGTGTACTTATTGTCTTCTGGAGCGGAGAAAACTTGGAGGCTATATGCGACAATGCCTAGAGATTATTGTGACACTTACGGCATTTGTGGGGCTTTCGGTAGTTGTAACCCGGGAGATTTTCCGGTCTGTCAATGCTTGAAAGGGTTCAGTCCTATGATGCCTGCGAAATGGAAGTTAGCTGAGTACGAGGAGGGGTGTTTTCGTAATAAACCGTTGAACTGTGGGGAGAAATTTGGATTTGTGAAATATCCGAGGTTGAAATTGCCAGAAACGAAGAATACTTGGGTGAATGAGAGTATGAGTCTCAAGCAATGTAGGGAGAAATGCTTGAGTAATTGCTCATGTACTGGATATGCAAATACAGATATTAGAGGAAAGGGGAGTGGATGTGTTATCTGGTTTGGTGATTTGGTTGATATCAAACATATTACGAGTGGAGGACAGGATTTATATGTCCGACTGTCGGATTCGGAATTAGATACAAAGAGTAATAGAGTGATCATCATTGGAGTAATAGTTGCTGCTACTGCTGTTATCATTGCCGGGCTGCTCTTAGGGGGATTCTACATCATCCGGAAAAAGAAAAAGATCAAAGGTACGGGGAAAAATGGAGCGAAAGATGATTTAGAGCTGCCCTTATTTGATTTATCTTCAATAGCTTGTGCCACTGATAACTTTTCTTTCAATAACAAGCTCGGAGAAGGTGGTTTCGGATCTGTGTTCCAGGGTACTCTAGCAGACGGACAAGAAATTGCAGTGAAGAGACTGTCTAGTTGTTCAAGACAAGGAGTTGATGAGTTCAAGAATGAAGTGATACTAATAGCCAAACTTCAACACAGAAATCTCGTTCGGCTTTTAGGTTGTTGCATTGAAGATGAAGAGAAGATGCTGGTTTATGAGTACATGCCTAACAAGAGCTTAGACTCCATCCTTTTCGAAGAAGCAAGAAGGAAAGTGTTAGATTGGTCGAAGCGGTTCAACATAATATGCGGGATTGCTAGGGGGCTTCTCTATCTTCATCAAGATTCTAGACTTAGGATTATTCATAGAGATCTCAAAGCAAGCAATGTCTTGCTTGATGTTGATATGAACCCTAAGATCTCCGACTTTGGCATGGCTAGAACTTTTGGAGGAGATCAAACTGAAGGAAATACTCGCAGAGTGGTTGGAACTTATGGCTATATGGCACCGGAATATGCTATTGACGGACAGTTCTCGGTAAAATCCGATGTCTTTAGTTTTGGAATTTTAATGCTGGAGATCATAAGTGGAGAGAAGAATAGAGGATTTTATCGACCAAACAACGGACTTAATCTTGTAGGACATGCATGGACTTTATGGAATGAAGGGAGACCTTTAGAGCTTATCGATGTAGCCATCGGAGATTCCTATGCAATTTCTGAGGTGCTTCGTTGCATTCAAATAAGTCTGTTATGTATGCAGCAACATCCGGAAGACAGACCAACTATGTCACATGTGGTCTTGATGTTGAGCAGTGAGAGCGCATTGCCTCAACCGAAAGAACCGGGTTTCTATATGGCTGCCAAAGAGTCACCAGAACTGTATTACATCTCCGGCAAGAACGATACGTCTTCCACGAACGAGATGACCATTACACAGTTGGAAGCTCGTTGA 2442 42.22 MDAVSCTFILVLSCFKISAAIEIDSISQSQNLTDGTTMVSRSGLFELGFFSPGISKNRYLGIWYKNISVPTYVWVANRVNPINDSSGTFMIDNLTNSLILTQNNTLVWSANYSSKQVQNPTLQLLDSGNLVLKEKGNSDDNSNSNYLWQSFDYPTDTLLPDMKIGWDFRTNLNRRLSAWTSPDDPSPSSLTMEMENNSYPEPAMWNGSKEYMRSGPWNGITYSAKPTTALPIIIYNYAHTKDELSFGYKLVNQSMIGRMILNQSMNRREVYLLSSGAEKTWRLYATMPRDYCDTYGICGAFGSCNPGDFPVCQCLKGFSPMMPAKWKLAEYEEGCFRNKPLNCGEKFGFVKYPRLKLPETKNTWVNESMSLKQCREKCLSNCSCTGYANTDIRGKGSGCVIWFGDLVDIKHITSGGQDLYVRLSDSELDTKSNRVIIIGVIVAATAVIIAGLLLGGFYIIRKKKKIKGTGKNGAKDDLELPLFDLSSIACATDNFSFNNKLGEGGFGSVFQGTLADGQEIAVKRLSSCSRQGVDEFKNEVILIAKLQHRNLVRLLGCCIEDEEKMLVYEYMPNKSLDSILFEEARRKVLDWSKRFNIICGIARGLLYLHQDSRLRIIHRDLKASNVLLDVDMNPKISDFGMARTFGGDQTEGNTRRVVGTYGYMAPEYAIDGQFSVKSDVFSFGILMLEIISGEKNRGFYRPNNGLNLVGHAWTLWNEGRPLELIDVAIGDSYAISEVLRCIQISLLCMQQHPEDRPTMSHVVLMLSSESALPQPKEPGFYMAAKESPELYYISGKNDTSSTNEMTITQLEAR 813
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 537676 541019 - Conep09aG0012300.1 Cone9ag0123 444286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0123 813 CDD B_lectin 32 154 IPR001480 -
Cone9ag0123 813 ProSiteProfiles Bulb-type lectin domain profile. 23 145 IPR001480 -
Cone9ag0123 813 Gene3D Phosphorylase Kinase; domain 1 459 570 - -
Cone9ag0123 813 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524(InterPro)
Cone9ag0123 813 ProSiteProfiles Protein kinase domain profile. 495 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0123 813 PIRSF SRK 1 813 IPR024171 GO:0004674(InterPro)
Cone9ag0123 813 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 780 - -
Cone9ag0123 813 Gene3D Hepatocyte Growth Factor 340 422 - -
Cone9ag0123 813 Pfam Domain of unknown function (DUF3403) 767 813 IPR021820 GO:0004674(InterPro)
Cone9ag0123 813 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 185 IPR036426 -
Cone9ag0123 813 Pfam Protein tyrosine and serine/threonine kinase 496 763 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0123 813 Gene3D - 19 151 IPR036426 -
Cone9ag0123 813 SMART blect_4 29 154 IPR001480 -
Cone9ag0123 813 ProSiteProfiles PAN/Apple domain profile. 343 424 IPR003609 -
Cone9ag0123 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 460 570 - -
Cone9ag0123 813 SUPERFAMILY Protein kinase-like (PK-like) 480 766 IPR011009 -
Cone9ag0123 813 MobiDBLite consensus disorder prediction 794 813 - -
Cone9ag0123 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 571 774 - -
Cone9ag0123 813 Pfam PAN-like domain 344 409 IPR003609 -
Cone9ag0123 813 SMART serkin_6 495 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0123 813 CDD STKc_IRAK 501 766 - -
Cone9ag0123 813 Gene3D Transferase(Phosphotransferase) domain 1 571 776 - -
Cone9ag0123 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 342 423 - -
Cone9ag0123 813 CDD PAN_AP_plant 340 424 - -
Cone9ag0123 813 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0123 813 SMART ntp_6 344 423 IPR003609 -
Cone9ag0123 813 Pfam S-locus glycoprotein domain 213 321 IPR000858 GO:0048544(InterPro)
Cone9ag0123 813 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 151 - -
Cone9ag0123 813 Pfam D-mannose binding lectin 71 179 IPR001480 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0103 Cone-Chr6:501150 Cone9ag0123 Cone-Chr9:537676 0 dispersed
Cone6ag1065 Cone-Chr6:6254890 Cone9ag0123 Cone-Chr9:537676 1.45E-270 dispersed
Cone9ag0121 Cone-Chr9:528827 Cone9ag0123 Cone-Chr9:537676 8.45E-241 dispersed
Cone9ag0123 Cone-Chr9:537676 Cone9ag1057 Cone-Chr9:5762145 4.46E-272 dispersed
Cone9ag0122 Cone-Chr9:534273 Cone9ag0123 Cone-Chr9:537676 1.64E-225 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83155 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0123 - - - 0.0