Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0132 ATGGCAGCTGCTGCTAGCTCTAGCACTCTCCTTAGAGCAACCCCATTTCTGGGCCAGAGCAGAGGCTCTAGCTCTAACGCCTTACGAGATGTTGTCTCTATGGGAACTGGAAAATACACCATGGGGAATGACTTGTGGTACGGACCAGACAGGGTGAAGTATTTAGGACCATTTTCTGCCCAGACTCCTTCTTACCTGACCGGGGAATTCCCCGGCGATTACGGATGGGACACTGCCGGATTATCTGCTGATCCAGAGGCATTTGCCAAGAACAGGGCTCTTGAGGTAATCCACAGCAGGTGGGCCATGCTCGGAGCATTGGGCTGCATCACCCCAGAAGTCCTTGAGAAATGGGTCAAAGTGGACTTCAAGGAACCAGTCTGGTTCAAAGCCGGAGCCCAAATTTTCTCGGAAGGAGGGCTAGACTACTTGGGCAACCCCAATTTGGTTCATGCTCAGAGCATCTTAGCAGTGTTGGGCTTTCAGGTGGTTCTGATGGGTCTTGTTGAAGGCTTCCGCATCAATGGCCTGGAAGGAGTAGGAGAAGGGAACAACTTGTACCCTGGTGGTCAATACTTTGACCCATTGGGCCTTGCTGATGACCCTGTCACTTTCGCTGAGCTTAAGGTCAAGGAACTCAAGAATGGTCGCCTTGCCATGTTCTCTATGTTTGGGTTCTTTGTGCAGGCCATTGTTACCGGAAAAGGCCCACTTGAGAACCTCTTGGACCACCTCGACAACCCAGTTGCTAACAATGCTTGGGTTTATGCCACCAAGTTCGTGCCTGGATCATAA 795 51.32 MAAAASSSTLLRATPFLGQSRGSSSNALRDVVSMGTGKYTMGNDLWYGPDRVKYLGPFSAQTPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHSRWAMLGALGCITPEVLEKWVKVDFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLEGVGEGNNLYPGGQYFDPLGLADDPVTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGS 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 578039 579402 + Conep09aG0013300.1 Cone9ag0132 444295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0132 264 Pfam Chlorophyll A-B binding protein 63 231 IPR022796 -
Cone9ag0132 264 SUPERFAMILY Chlorophyll a-b binding protein 45 261 - -
Cone9ag0132 264 Gene3D Chlorophyll a/b binding protein domain 53 257 - -
Cone9ag0132 264 FunFam Chlorophyll a-b binding protein, chloroplastic 53 257 - -
Cone9ag0132 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 22 263 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0132 Cone-Chr9:578039 Cone9ag0912 Cone-Chr9:4480977 5.22E-122 dispersed
Cone11ag1332 Cone-Chr11:9782227 Cone9ag0132 Cone-Chr9:578039 9.61E-67 transposed
Cone6ag0112 Cone-Chr6:539985 Cone9ag0132 Cone-Chr9:578039 6.97E-191 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0132 K08914 - mdm:103408183 513.072