Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0133 ATGCAGTGTTCTGGGATCCACAGAAGTCTTGGGGTTCACATATCAAAGGTGAGGTCTGCTACCTTGGACACATGGCTTCCCGAGCAGGTTGCTTTTATTCAATCAATGGGGAATGACAGGGCAAATAGTTACTGGGAGGCAGAGCTTCCACCAAATTATGACAGAGTTGGGATAGAGAATTTTATTCGTGCAAAGTATGAAGATAAGAGGTGGGTTGCTAGGAATGAAAAACCAAAATCACCTTCTCGGCGGCAGGAAGAAAACGCATCTTTGCATTGGCAGAGACCTGCAGAGAGAAGCGGCCAGGGGTTTCCTGGCAATTCTGAAAATTTGTTTGAGGGAAGTAAGAACATTCAAGCACCGAGTTCGAAACAAACTGTTCCTGCTACAAGAGTCCCTTCAGTTTCAAATCCACAGCAAGTTCAGAAAGCAAAACCCCCAGTACTGCAATCTGAAGCACCAAAGCAGGCTGCAGAAACTGTTTCAACTGTCCCTCCTCCAAAAGTTGATTATGCTACCGACCTTTTTAATATCCTATCACTGGATGATCCTACTGAAAATGGCTCTTCACCAGCAACTGGTGATGATAATTCTTGGGCAGGTTTCCAGTCTGCTGAAGGAGCATCAGACAGTGAAAATTCTGGACCAGCAAAACCAGGTGAGAGCACCACTCAGGCTGCTTCTGGAATCGAAGATCTTCTCAAAGATTCAACTTCTGCTTCACCTTCTTTAGTTTCTGAGAAACCGCAAAAAGATGTGAAAAATGATATTATGAGTCTTTTTGAGAAGTCCAGCATTGTGTCTCCTTTTGCTATGCATCAACAGCAACTTGCGATGCTGTCACAACAGCAATCCCTTCTCATGGCTGCTGCAGCTAAATCTGCTGGTGGGGACCTAAAATTTTCCAATATTACACAACAACCTCAACCTGTAGCCCAAGGTATCAATTTAGTCTCTCAAAGTTGGCCAAATGTTGGCTACCAAATTCCTGGAAACGGCATGCTAACAGCTGGAGGCGATCTACAGAAACTAATGCAGACAATGAACATGGGGGCAGGAAATCCAGTTGGGGGTTTTGCTCAACATCCAACAGCTAGTTTTTATGCCATGGGTCAAGTTGCCCCTGTGCCAGTTAATGGCGTGAAGCCTAGTCGAGTCGGCACACGTCAACCAGCAGTTCCAGTGCCATCTGCTACTCCTACGAAATCAGCTAATGACTATGATTTCTCCTCTTTAACACAGGGGATGTTTTCTAAACCCTAG 1263 45.13 MQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNDRANSYWEAELPPNYDRVGIENFIRAKYEDKRWVARNEKPKSPSRRQEENASLHWQRPAERSGQGFPGNSENLFEGSKNIQAPSSKQTVPATRVPSVSNPQQVQKAKPPVLQSEAPKQAAETVSTVPPPKVDYATDLFNILSLDDPTENGSSPATGDDNSWAGFQSAEGASDSENSGPAKPGESTTQAASGIEDLLKDSTSASPSLVSEKPQKDVKNDIMSLFEKSSIVSPFAMHQQQLAMLSQQQSLLMAAAAKSAGGDLKFSNITQQPQPVAQGINLVSQSWPNVGYQIPGNGMLTAGGDLQKLMQTMNMGAGNPVGGFAQHPTASFYAMGQVAPVPVNGVKPSRVGTRQPAVPVPSATPTKSANDYDFSSLTQGMFSKP 420
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 582894 587137 - Conep09aG0013400.1 Cone9ag0133 444296

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0133 420 MobiDBLite consensus disorder prediction 180 226 - -
Cone9ag0133 420 SMART arf_gap_3 2 79 IPR001164 GO:0005096(InterPro)
Cone9ag0133 420 MobiDBLite consensus disorder prediction 73 93 - -
Cone9ag0133 420 Pfam Putative GTPase activating protein for Arf 1 74 IPR001164 GO:0005096(InterPro)
Cone9ag0133 420 CDD ArfGap 1 66 - -
Cone9ag0133 420 MobiDBLite consensus disorder prediction 384 412 - -
Cone9ag0133 420 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 419 IPR044520 GO:0005096(InterPro)
Cone9ag0133 420 Gene3D Arf GTPase activating protein 1 80 IPR038508 -
Cone9ag0133 420 MobiDBLite consensus disorder prediction 394 412 - -
Cone9ag0133 420 SUPERFAMILY ArfGap/RecO-like zinc finger 1 73 IPR037278 -
Cone9ag0133 420 MobiDBLite consensus disorder prediction 73 168 - -
Cone9ag0133 420 MobiDBLite consensus disorder prediction 101 146 - -
Cone9ag0133 420 ProSiteProfiles ARF GTPase-activating proteins domain profile. 1 79 IPR001164 GO:0005096(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0133 K12486 - - vvi:100262374 491.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0472 Cone-Chr8:3138858 Cone9ag0133 Cone-Chr9:582894 3.30E-08 dispersed
Cone6ag0115 Cone-Chr6:553259 Cone9ag0133 Cone-Chr9:582894 5.29E-246 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g290 . . . . . . . . . . . . Car01g01000 . . Cpe06g00717 Cpe02g00724 . . . . . . . Cla11g01802 Cam11g1868 Cec11g1892 Cco11g1898 Clacu11g2031 Cmu11g1836 Cre11g2243 Cone6ag0115 Cone9ag0133 . . Lsi04g01282 . . . . . . . Bpe11g00502 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005696 1 1 2 2 2 0 2 1 0 1 1 1 1 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 1 1 35