Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0151 ATGTCTAGCCAGTTTCTTGCCCACCAGACCCAAACCCAATTGGTCAAAGCAAAACAGATGATGAGGATCCAACGGCTAGGGCCATGTGATGTGTTCATAAACCATAGATGCAGAGACACGAAGAAAACAATAGCCTCTTTGCTCTATGATCATCTTTTGAGGCACAACTTAAGGCCCTTCTTGGACAGCAAGAACATGAAGCCAGGCGACAAACTTTTTGATAAGATTGACGGTGCGATAAAGCATTGCAAAATAGGACTGGCTCTGTTCTCGCCTCGTTATTGTGACTCATATTTTTGCCTTCATGAACTAGCTTTACTTTTGGAGTCTAATAAGAAGATCATCCCTATTTTTTGCGACGTCAAGCCATCTCAGCTTCGTGTTCCCGACAATGGCAAATGTGGGCCACAGGAGATTGGAAGATTCAGGTGGGCCCTTGAAGAGGCTAAGTACACCGTGGGGATGACGTATGACTCCTCCAAGGGGAACTTGTCTGAAGTCGTCACTAATGCTGGAAATGCTGTGATCAAAAGTTTGATGGAGATGGATCATGAAGATCAGAAGATGTATAATCGAAAAATCTAA 585 43.93 MSSQFLAHQTQTQLVKAKQMMRIQRLGPCDVFINHRCRDTKKTIASLLYDHLLRHNLRPFLDSKNMKPGDKLFDKIDGAIKHCKIGLALFSPRYCDSYFCLHELALLLESNKKIIPIFCDVKPSQLRVPDNGKCGPQEIGRFRWALEEAKYTVGMTYDSSKGNLSEVVTNAGNAVIKSLMEMDHEDQKMYNRKI 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 667332 668030 - Conep09aG0015300.1 Cone9ag0151 444314

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0151 194 Pfam TIR domain 31 123 IPR000157 GO:0007165(InterPro)
Cone9ag0151 194 ProSiteProfiles TIR domain profile. 27 175 IPR000157 GO:0007165(InterPro)
Cone9ag0151 194 PANTHER TMV RESISTANCE PROTEIN N-LIKE 22 187 - -
Cone9ag0151 194 SUPERFAMILY Toll/Interleukin receptor TIR domain 29 151 IPR035897 -
Cone9ag0151 194 SMART till_3 28 161 IPR000157 GO:0007165(InterPro)
Cone9ag0151 194 Gene3D - 2 134 IPR035897 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0151 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0126 Cone-Chr6:618878 Cone9ag0151 Cone-Chr9:667332 2.45E-108 wgd
Cone6ag1033 Cone-Chr6:5841408 Cone9ag0151 Cone-Chr9:667332 2.81E-81 wgd
Cone9ag0151 Cone-Chr9:667332 Cone9ag1030 Cone-Chr9:5487718 2.26E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g266 . . . . . . . . Cmo16g00850 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0126 Cone9ag0151 . . . Csa03g00615 . . . . . . . Bpe01g00410 . . . . . Cma04g00910 . Car04g00855 . Cpe14g00686 . . . . . . . . . . . . . . . Lsi05g00707 . Chy06g01710 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002140 0 2 1 1 1 2 4 2 2 2 2 2 4 2 2 3 2 5 3 2 2 2 2 2 2 2 2 3 2 1 64