Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0154 ATGAGCAAGACCGGCGAGGAAGACGACGACGACGAGCGCTTTTACGAGTCACTCGATCGAATAGTCTCTTCCTCATGCTCCTGTTCTACTTCCAATTCCGACGACGACATCAACTCCAACTCTAGCTCCCCCAATCATGCATCCGAGCGTCCCTTCCCAATCCCTAACTTTCCAAAGGGCGGCGTTTCCAATTACGACGTCTGGATCTCTGAGCCTTCCTCGGTTTCTGAGCGCCGAAACCGTCTTCTCCGCGATCTAGGTTTAAGTCGGGACCCTTCTCTGTCCCGTATTAAACCTACTTCCGACGACGGTGATAAATCTTCCGCTGATTTTGACCGATCAGCGTCCGATCACTTGAGCCGTCAACATAAACGCACATCTGTCATCCGATCGAAATCCGACGGCAAGGCAAATGGAAGCAAAAACGCTGCTTCGGAATCTCCTCATGGTAATGACAGTAATAGTAGAAATAATAAGTGTACTTCTTCTTCCTCGTCTTTTTCTTCTCCTTCAATTGTTTCGATTCATTCAACCAATCAGACCGGTTCATCTGTAAATAATCGCAAGCCCTTGGGTGTTAAATCGAGAACAAGCAAGAGCGATGGAATTCCCCCTGTTGCTATTGCTGCTTCCACAAATAAACTTCCTTTAAAGCAAAATGGTAAAATGGGGAATGGGATTTCAATCGATTCCACGCTTTTGAACGGCAATACTCATTCCAATTCACTGCCCGTTGCTCGGGATTCTCTCAGCAGTGAAGTTAGAGAAGATTCGGACTGTAACGGAGTTCATAATGTTGATGCTGAAGTATGCACAATTAAAGATCTTGATAACGGGAAAGAGTTTGTTGTTAATGAGATTAGGGAAGATGGAATGTGGAACAAGCTCAAAGAAGTGGGCACCGGGAGGCAGTTGACCATGGAGGAGTTTGAGATGTGTGTTGGCCACTCACCCATTGTTCAAGAATTGATGCGTAGGCAGAATGTTGAAGAAGGTAATAATGATAATGCAGATTCAAATGTGAATGACGGTAATGGGGGGAGCTCTAAGTTGAAGAAGAAAGGAGGTTGGTTTAAGAGTATAAAGAGTGTTGCAAGCACTATGACTGGTCATAAAGAGAGACGGAGCAGTGACGAGAGGGACACCTCATCTGAGAAGGGTGGTAGAAGGTCGAGCTCTGCAACTGATGATAGCCAAGATGTTTCATTTCACGGGCCAGAGAGGGTAAGGGTGAGGCAGTATGGAAAATCATCAAAAGAGCTAACTGCACTGTACAAGAGCCAGGAGATTCAGGCTCATAATAAGTCTATATGGAGTATTAAGTTTAGTTTGGATGGGAAATATCTTGCTAGTGCAGGAGAGGATCGGGTCATTCATATTTGGAAGGTTGTGGAATCAGAGAGGAAAGGTGATTTGTTGATGGAGAAAGCAGAAGAGGGGAATTTGAATCTTTTGCTTTTAGGCAATGGGTCGCCTGAACCTACTTTGTTATCATCAAACATGGACAACCTTCTAGAGAAGAAAAGAAGAGGGAGAGCTTCCATAAGCCGAAAATCAGTAAGCTTGGACCATATTGTAGTGCCAGAGACTGTTTTTGGTCTCTCTGAAAAGCCGATTTGTTCATTCCAGGGACATCTTGATGATGTGCTTGACCTCTCATGGTCCAAGTCTCAGCATTTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATATGTCTAGCAAATCTTGTTTGAAAATATTTTCACACAGTGATTATGTAACTTGCATCCAGTTTAATCCAGTCGATGATAGATACTTCATTAGCGGATCTTTAGATGCTAAAGTTCGGATATGGAGTATCCCTGAGCGTCAGGTTGTTGATTGGAGGGATCTGCATGAGATGGTCACTGCTGCCTGCTATACTCCAGATGGTCAGGATGCTTTGGTTGGTTCACACAAGGGTAGCTGCCGTTTGTACAATACATCTGAGAACAAGTTGCAACTAAAAAGTGAAATCAATTTGCAGAACAAGAAGAAGAAATCTAATAAGAAGATTACTGGTTTCCAGTTTGCTCCAGGAAGCTCACCAGAAGTACTCATCACCTCTGCAGATTCACGCATCCGGGTTGTTGATGGCATCGATCTCGTCCACAAGTTCAAAGGGTTCCGAAATACAAACAGCCAAATCTCAGCCTACGTCACAGCGAACGGCAAGCATGTGGTCTCTGCCAGCGAGGATTCTCATGTCTATATCTGGAAACAAGAAGCGGATCCCCGCCATAGCCGGGGCAAAGGAGTAACAGCCACAACTACGTATGAGCATTTCCACTGCCCTGATGTCACGGTGGCTATCCCTTGGCCCGGAGTAAATGACACATGGGGACGTGAAGATCCTCATTCCCGAGACGGAGAAAATGGGGTCGATGAAAGTTGTGATCACATGTCAGTTGCCAATCACCCTCCAACACCTGTTGAGGCAGCTAATGATAACGAGGGTTCAAGGCCGGCTTCTGGCTGCACCAATAGTCCACTTAATGGAACGATTTCTAGTGCGACTAATGGTTACTTCTTTGATAGAATCTGTGCAACTTGGCCGGAGGAAAGGCTTCTCAGGAGAAGTAGGAACCGGAGCAGCCCACGTGTTAGTTTTGATGTCTCTAATGGAATGAATCAGAGCATGCCGGCTTGGGGTATGGTGATTGTGACTGCTGGCCTTCGAGGAGAAATTCGAACATTCCAGAACTTTGGATTACCGGTTCGAATCTAA 2754 45.57 MSKTGEEDDDDERFYESLDRIVSSSCSCSTSNSDDDINSNSSSPNHASERPFPIPNFPKGGVSNYDVWISEPSSVSERRNRLLRDLGLSRDPSLSRIKPTSDDGDKSSADFDRSASDHLSRQHKRTSVIRSKSDGKANGSKNAASESPHGNDSNSRNNKCTSSSSSFSSPSIVSIHSTNQTGSSVNNRKPLGVKSRTSKSDGIPPVAIAASTNKLPLKQNGKMGNGISIDSTLLNGNTHSNSLPVARDSLSSEVREDSDCNGVHNVDAEVCTIKDLDNGKEFVVNEIREDGMWNKLKEVGTGRQLTMEEFEMCVGHSPIVQELMRRQNVEEGNNDNADSNVNDGNGGSSKLKKKGGWFKSIKSVASTMTGHKERRSSDERDTSSEKGGRRSSSATDDSQDVSFHGPERVRVRQYGKSSKELTALYKSQEIQAHNKSIWSIKFSLDGKYLASAGEDRVIHIWKVVESERKGDLLMEKAEEGNLNLLLLGNGSPEPTLLSSNMDNLLEKKRRGRASISRKSVSLDHIVVPETVFGLSEKPICSFQGHLDDVLDLSWSKSQHLLSSSMDKTVRLWHMSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPERQVVDWRDLHEMVTAACYTPDGQDALVGSHKGSCRLYNTSENKLQLKSEINLQNKKKKSNKKITGFQFAPGSSPEVLITSADSRIRVVDGIDLVHKFKGFRNTNSQISAYVTANGKHVVSASEDSHVYIWKQEADPRHSRGKGVTATTTYEHFHCPDVTVAIPWPGVNDTWGREDPHSRDGENGVDESCDHMSVANHPPTPVEAANDNEGSRPASGCTNSPLNGTISSATNGYFFDRICATWPEERLLRRSRNRSSPRVSFDVSNGMNQSMPAWGMVIVTAGLRGEIRTFQNFGLPVRI 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 685015 689855 + Conep09aG0015600.1 Cone9ag0154 444317

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0154 917 MobiDBLite consensus disorder prediction 23 49 - -
Cone9ag0154 917 FunFam WD repeat-containing protein 44 523 788 - -
Cone9ag0154 917 MobiDBLite consensus disorder prediction 333 347 - -
Cone9ag0154 917 Pfam WD domain, G-beta repeat 537 572 IPR001680 GO:0005515(InterPro)
Cone9ag0154 917 Pfam WD domain, G-beta repeat 578 615 IPR001680 GO:0005515(InterPro)
Cone9ag0154 917 Pfam WD domain, G-beta repeat 725 748 IPR001680 GO:0005515(InterPro)
Cone9ag0154 917 Pfam WD domain, G-beta repeat 428 461 IPR001680 GO:0005515(InterPro)
Cone9ag0154 917 PRINTS G protein beta WD-40 repeat signature 560 574 IPR020472 -
Cone9ag0154 917 PRINTS G protein beta WD-40 repeat signature 449 463 IPR020472 -
Cone9ag0154 917 PRINTS G protein beta WD-40 repeat signature 602 616 IPR020472 -
Cone9ag0154 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 542 582 IPR001680 GO:0005515(InterPro)
Cone9ag0154 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 542 576 - -
Cone9ag0154 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 430 463 IPR001680 GO:0005515(InterPro)
Cone9ag0154 917 SMART WD40_4 618 656 IPR001680 GO:0005515(InterPro)
Cone9ag0154 917 SMART WD40_4 423 462 IPR001680 GO:0005515(InterPro)
Cone9ag0154 917 SMART WD40_4 708 749 IPR001680 GO:0005515(InterPro)
Cone9ag0154 917 SMART WD40_4 576 615 IPR001680 GO:0005515(InterPro)
Cone9ag0154 917 SMART WD40_4 671 707 IPR001680 GO:0005515(InterPro)
Cone9ag0154 917 SMART WD40_4 535 573 IPR001680 GO:0005515(InterPro)
Cone9ag0154 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 430 463 - -
Cone9ag0154 917 Gene3D - 414 775 IPR015943 GO:0005515(InterPro)
Cone9ag0154 917 PANTHER WD REPEAT DOMAIN 44 12 917 IPR040324 -
Cone9ag0154 917 MobiDBLite consensus disorder prediction 96 131 - -
Cone9ag0154 917 MobiDBLite consensus disorder prediction 331 414 - -
Cone9ag0154 917 MobiDBLite consensus disorder prediction 789 837 - -
Cone9ag0154 917 MobiDBLite consensus disorder prediction 91 207 - -
Cone9ag0154 917 ProSiteProfiles Trp-Asp (WD) repeats profile. 582 616 IPR001680 GO:0005515(InterPro)
Cone9ag0154 917 MobiDBLite consensus disorder prediction 368 393 - -
Cone9ag0154 917 MobiDBLite consensus disorder prediction 790 805 - -
Cone9ag0154 917 SUPERFAMILY WD40 repeat-like 426 752 IPR036322 GO:0005515(InterPro)
Cone9ag0154 917 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 582 616 - -
Cone9ag0154 917 MobiDBLite consensus disorder prediction 23 66 - -
Cone9ag0154 917 MobiDBLite consensus disorder prediction 132 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0154 K20241 - - csv:101208316 1192.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone5ag0704 Cone-Chr5:3021125 Cone9ag0154 Cone-Chr9:685015 1.46E-99 dispersed
Cone6ag1293 Cone-Chr6:10360292 Cone9ag0154 Cone-Chr9:685015 8.32E-85 dispersed
Cone9ag0154 Cone-Chr9:685015 Cone9ag1247 Cone-Chr9:9140304 3.75E-82 dispersed
Cone14ag1075 Cone-Chr14:9015738 Cone9ag0154 Cone-Chr9:685015 1.12E-279 wgd
Cone15ag1068 Cone-Chr15:8821622 Cone9ag0154 Cone-Chr9:685015 6.88E-278 wgd
Cone6ag0130 Cone-Chr6:637844 Cone9ag0154 Cone-Chr9:685015 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34