Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0159 ATGGCATTGAGTTTATTAGCGCATGATGTATCGGACCTCTGCCTGGGCAAGCCAGCGCTGAGGCCTCTGTCTATCGCCGCCAGCATCTCCGACGCCTTGCTGGCCTTGAATCTCTCCGACGACAACTACATAAGCGTCTGGGATTGCAATCACTCCTCTGTTGATGATGGCTGCGATTGTGACTGCCGATGTGTCGGAAAGCTCTGCATGGTGGATGTGATTTGTTATCTCTGCCAAGATGACAACTTGTCGTCACCTTCTCTTTCTTTAGAAGCACCTGTCTCTGATATCTTGCCTAAGATTCCAGGTCTCGTTCTGCATTTGGATCCCTCTGCTAGCTTATTAGAAGCCATTGATCTGATCCTTGAAGGAGCACAAAACCTGGTAATACCAATCAAGACCAGACTCAACAACTATACAGAAAGAAGAAGACTCGAGCAAAAACCGATCAACCAAAACTGTGTCGGATTCTGCTGGTTGACTCAAGAAGGCATAATCCGATTCCTCCTCAGCTCAATAGGCCTCTTCTCTCCGATCCCATTCCTCTCCATCGAGTCTCTCCACATCATCAACACTAACGTCTTAACCACCCATTACCACTCCCCTACCTCCTCCGCCCTCAAATCCATCTCTCAATCCCTCACCGACCAAACCTCAGTCGCCGTCGTCGACTCCGATCGCATTCTGATCGGCGACATCTCACCCTTCACTCTCTCCGCCGCAGCAGTTACCTCCGGCGAGAACTCAATCTCTGCCGCCATAACCACCCTCTCCTCCGGCGACCTCATGGCTTACATCGACTGCATGGGCCCACCGGACGATCTAGTAAAAGTTGTTAAGGAGAGGTTGAAGGAGAGGAACTTGGAAGGTATGATTAAAGAGTTTGATAACTTGTCTTCGTGTTTGACGATTTCTTCGTCGGGTTCTTCCTCGTCGGACGAGGAGGCAGGTTGTACGAGGTGGTCGGGGAGGCTGAGAAGGAGTTGCAGCTATTCGGCGAGGAGCGTGAGGGGAGCTGAGGCCATAGTTTGTCATCCATGGAGTTCGTTGGTTGCTGTTATGATTCAGGCCATTGCTCATAGAGTGAATTACGTTTGGGTTATAGAAGATGATTGCACCTTGGTCGGAATCGTAACTTTTTCTGGTATTTTGAAGGTTTTTAGAGAACATTTAGCGAGTATGGATTAG 1188 49.41 MALSLLAHDVSDLCLGKPALRPLSIAASISDALLALNLSDDNYISVWDCNHSSVDDGCDCDCRCVGKLCMVDVICYLCQDDNLSSPSLSLEAPVSDILPKIPGLVLHLDPSASLLEAIDLILEGAQNLVIPIKTRLNNYTERRRLEQKPINQNCVGFCWLTQEGIIRFLLSSIGLFSPIPFLSIESLHIINTNVLTTHYHSPTSSALKSISQSLTDQTSVAVVDSDRILIGDISPFTLSAAAVTSGENSISAAITTLSSGDLMAYIDCMGPPDDLVKVVKERLKERNLEGMIKEFDNLSSCLTISSSGSSSSDEEAGCTRWSGRLRRSCSYSARSVRGAEAIVCHPWSSLVAVMIQAIAHRVNYVWVIEDDCTLVGIVTFSGILKVFREHLASMD 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 701789 703240 + Conep09aG0016100.1 Cone9ag0159 444322

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0159 395 SUPERFAMILY CBS-domain pair 181 391 IPR046342 -
Cone9ag0159 395 Gene3D - 198 394 IPR046342 -
Cone9ag0159 395 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 22 390 IPR050511 GO:0005634(PANTHER)|GO:0005737(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0159 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag1072 Cone-Chr14:9004527 Cone9ag0159 Cone-Chr9:701789 1.77E-139 wgd
Cone15ag1065 Cone-Chr15:8802183 Cone9ag0159 Cone-Chr9:701789 3.00E-138 wgd
Cone6ag0134 Cone-Chr6:656735 Cone9ag0159 Cone-Chr9:701789 4.61E-232 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g254 . . . . . . . . . . Cma01g01200 Cma09g00878 Car01g01025 Car09g00790 Sed04g3121 Cpe06g00701 Cpe02g00709 Bhi09g03398 Tan01g4413 Cmetu07g1669 . Hepe01g1374 Mch11g1085 . Cla11g01775 Cam11g1839 Cec11g1860 Cco11g1870 Clacu11g2001 Cmu11g1810 Cre11g2218 Cone6ag0134 Cone9ag0159 Cone14ag1072 Cone15ag1065 Lsi04g01322 Csa04g02358 Chy07g00087 . . . . . . . . . . Cmo01g01254 Cmo09g00867 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006788 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 4 2 1 1 1 1 1 1 1 1 1 1 1 34