Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0161 ATGGCGAAGAACAAGGAGAGGAAGGTGAGTGTTTCCGGTAAGCCGAAGCATTCATTGGACGCGAACAGGAAAGATGGGAAAAGTGATGCTCGTAGCGGCGCCACCGTCCGGCGGCTCAAGATGTACAAGACCAGGCCGAAGCGCGACCGGAAAGGGAAGGTGCTGAGGAATGAGTATCAGTCCAGGGAGTTGCCCAATACGCGAATCCAACCTGATCGCAGATGGTTCGGGAATACTCGTGTTGTGAATCAGAAAGAGCTTGAAATTTTCCGAGAAGAGCTACAAAACCGGATGTCAAGTAGTTACAATGTGATTTTGAAGGAAAGGAAACTTCCACTGTCTCTCTTAAATGATCACCAGAAGCAAGCCAGAGTTCATCTTCTGGATACAGAGCCCTTTGAGGATGCATTCGGACCAAAGAAAAAAAGGAAGCGCCCAAGGCTCTTAGCGGCTGATTATGAGTCATTACTTAAGAAAGCAGATGGTTCTCAGGATGCATTTATGGAGAAGCACGATGATTATGAAACAGCAGAAGGGGCTGAAGAAGATGGAGTTAGGGACCTAGTTCGGCATACAATGTTTGAGAAGGGTCAAAGTAAACGTATCTGGGGCGAGCTTTACAAAGTCATTGATTCTTCGGATGTTGTTGTCCAGGTGTTGGATGCAAGGGATCCTCAAGGGACTAGATGTTATCATTTGGAGAAGCACTTGAAAGAGCATTGCAAACATAAGCACATGGTTCTGTTGCTAAATAAGTGTGATTTGGTTCCTGCTTGGGCAACAAAAGATTGGCTTAGAGTGTTATCTAAGGAATATCCAACATTAGCATTTCATGCAAGCATCAACAAATCCTTTGGAAAGGGTTCTCTTCTATCGGTGTTGAGACAATTTTCACGGTTAAAAGCTGACAAACAAGCAATCTCAGTCGGATTTGTTGGATACCCCAATGTTGGAAAGTCCTCTGTGATCAACACACTGCGGACGAAGAATGTTTGCAAGGTTGCTCCTATCCCTGGGGAGACTAAAGTTTGGCAGTATATCACTCTCACTAAGAGGATTTTTCTCATCGATTGCCCTGGAGTTGTTTACCAAAATAGGGACACTGAAACAGATATTGTGCTGAAAGGAGTGGTACGTGTCACAAATTTGGAGGATGCTTCTGAACACATAGGAGAAGTTTTGAAACGTGTGGATAAAAAACACTTGGAAAGAGCATACAGAATAACAGAGTGGAAGGACGACTATGACTTCTTAGTTCAGCTATGCAGGCTGTCGGGAAAATTACTAAAGGGTGGTGAACCGGACTTAACAACAGCAGCAAAGATGGTGCTACATGACTGGCAGAGGGGTAAAATTCCCTTCTTTGTCAAGCCTCCTCGAGAAGCAGCTGCTTCGGAAGAGCCCAAGGAGGAATCTAAGGACTATGATCTTACTAACGCTTCTGGGGTTGATACCAGCAAGGCTTCTGCAGCATTTAAAGCCATTGCACAGGTGTTAACATCTCAGCAGGAAAGAAGCATTCCGGTTCAAAGAGATCTGTTCAGTGAAACTGAGTTAAAGGGTGAGGCCTCCAATCAAGCCCCCTGCTCTGCGGCTGTGGATGAGAATGAGGATGAAGCTTCTGAGAAGTCTCCCACCTCCGATTCTGAGGATGAAGACGAGCTTCCTGATACTGAATGA 1680 45.42 MAKNKERKVSVSGKPKHSLDANRKDGKSDARSGATVRRLKMYKTRPKRDRKGKVLRNEYQSRELPNTRIQPDRRWFGNTRVVNQKELEIFREELQNRMSSSYNVILKERKLPLSLLNDHQKQARVHLLDTEPFEDAFGPKKKRKRPRLLAADYESLLKKADGSQDAFMEKHDDYETAEGAEEDGVRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLEKHLKEHCKHKHMVLLLNKCDLVPAWATKDWLRVLSKEYPTLAFHASINKSFGKGSLLSVLRQFSRLKADKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYQNRDTETDIVLKGVVRVTNLEDASEHIGEVLKRVDKKHLERAYRITEWKDDYDFLVQLCRLSGKLLKGGEPDLTTAAKMVLHDWQRGKIPFFVKPPREAAASEEPKEESKDYDLTNASGVDTSKASAAFKAIAQVLTSQQERSIPVQRDLFSETELKGEASNQAPCSAAVDENEDEASEKSPTSDSEDEDELPDTE 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 707963 711537 + Conep09aG0016300.1 Cone9ag0161 444324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0161 559 MobiDBLite consensus disorder prediction 1 36 - -
Cone9ag0161 559 Gene3D - 364 456 IPR023179 -
Cone9ag0161 559 MobiDBLite consensus disorder prediction 544 559 - -
Cone9ag0161 559 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 203 364 IPR030378 GO:0005525(InterPro)
Cone9ag0161 559 MobiDBLite consensus disorder prediction 500 559 - -
Cone9ag0161 559 MobiDBLite consensus disorder prediction 460 481 - -
Cone9ag0161 559 MobiDBLite consensus disorder prediction 1 66 - -
Cone9ag0161 559 MobiDBLite consensus disorder prediction 462 477 - -
Cone9ag0161 559 CDD NGP_1 205 361 IPR024929 GO:0005730(InterPro)
Cone9ag0161 559 PANTHER GTP-BINDING PROTEIN-RELATED 16 553 IPR050755 GO:0005730(PANTHER)
Cone9ag0161 559 Pfam NGP1NT (NUC091) domain 41 166 IPR012971 -
Cone9ag0161 559 FunFam Nuclear/nucleolar GTPase 2 202 364 - -
Cone9ag0161 559 FunFam Nucleolar GTP-binding protein 2 366 456 - -
Cone9ag0161 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 199 393 IPR027417 -
Cone9ag0161 559 PRINTS GTP1/OBG GTP-binding protein family signature 309 329 IPR006073 GO:0005525(InterPro)
Cone9ag0161 559 PRINTS GTP1/OBG GTP-binding protein family signature 355 370 IPR006073 GO:0005525(InterPro)
Cone9ag0161 559 Gene3D - 193 363 IPR027417 -
Cone9ag0161 559 Pfam 50S ribosome-binding GTPase 309 368 IPR006073 GO:0005525(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0161 K14537 - - csv:101207909 875.544
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag0886 Cone-Chr8:8665824 Cone9ag0161 Cone-Chr9:707963 7.18E-57 dispersed
Cone6ag0136 Cone-Chr6:662270 Cone9ag0161 Cone-Chr9:707963 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g247 . Blo03g01541 . Bda09g00500 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0136 Cone9ag0161 . . . . . . . . . . . . Bma07g01183 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006194 1 2 1 2 0 1 1 1 1 2 1 1 1 0 1 1 1 2 1 1 1 1 1 1 1 2 1 5 1 1 37