Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0171 ATGGGCTGCATTTGTTGCAAGCCCTATGCTATAGAAGATAGCAAGGAAAGCAGCCCAAGGGAACGAGCCGCCTCAACCAAGGCCTCATCGGACCTACGGGTCTCAAGACTCGCTTCCTCGAGGAGAGAGGAAGCAGTTCATCGGCCTAAAGATCTGTATGAAACTAATGAAGGGAGAGGAGCCGTTTTGATCGATAAGCAAGTGAACAGGTCTATACGGCCACAAGGAGGTGACAATTTTGAAAGGAAGAGGGAAAAGATGGAGTATCATGTACTTGCTCATTATCCAGGGGCAGGTAGTATTCCTAGAGCTACGGAAGGTGAACAAATTGCTGCAGGGTGGCCTGCCTGGCTTGCGGCCGTGGCCGGAGAAGCTATCAAGGGGTGGTTACCTCGCCGAGCTGATTCTTTTGAGCGGCTTGATAAAATTGGGCAGGGTACTTATAGTAATGTCTATAGAGCTCGAGATCTTGATCAGAAGAAAATTGTTGCTTTGAAGAAAGTGAGGTTTGACAACCTCGAGCCAGAGAGTGTTCGTTTTATGGCGAGAGAAATTCACATTTTGCGCCGGCTTAATCATCCAAATGTAATAAAGTTGGAAGGCCTAGTCACATCAAGGATGTCTTGCAGCTTGTACCTTGTTTTTGAGTACATGGAACATGACTTAACCGGGCTTGCTTCTCACCCTGGTCCAAAATTTACAGAAGCACAGGTCAAATGTTACATGCAACAACTGTTGCAGGGATTGGAGCATTGCCACAGCTGTGGTGTTTTGCACCGAGACATTAAGGGTTCAAACCTTCTAATTGACAACAATGGCATATTGAAAATTGCGGACTTCGGGCTGGCGAGTTTATTTGACCCCAATCAAAGGCAACCACTGACCAGCCGTGTTGTAACCCTGTGGTACCGACCTCCCGAGCTTTTACTTGGAGCCACTTACTATGGGACAGCTGTTGACTTATGGAGTACGGGTTGTATACTTGCTGAGTTGTATGCCGGAAAGCCTATCATGCCTGGAAGAACCGAGGTGGAGCAGTTGCATAAAATATTCAAACTATGCGGGTCCCCCTCTGAGGAATATTGGAAAAAGTCGAAGCTGCCTCATGCAACTATATTTAAGCCACAACAGCCCTATAGACGTCGAGTTGCTGAAACGTTTAAGGATTTTCCAGCGCCTGCCTTAGCTCTTATGGAGATGCTTCTTTCCATTGATCCTGCTGATCGTGGATCTGCAACTTCTAGTCTTAAGAATGAATTTTTTACCACAAAGCCACTTCCATGTGATCCTTCGAGTTTGCCAAAGTATCCTCCCAGCAAAGAGTTTGATGCAAAACTGCGTGATGAAGAATCTAGAAGACAAGGAGTGGATGGAAACAAGGGCCAGAGACTTGACCTTGAAAGGAGAGGAACACGAGAATCTCGAGCAGTCCCTGCCCCTGATGCCAATGCTGAATTAGTCTTGTCAATGCAGAAAAGACAAGGTCAGTCTAATTCCAAAAGCCGGAGTGAGAAGTTCAACCCTCATCCAGAAGAAATTGCTTCTGGATTTCCAATGGATCCACCTAGACCTTCCCAGGTTGTAGAAGCAAGTGTAGAATCTCATGAGCACCATCCAAAGAGAGCCTCCCATTCTGGCCCACTTGCTCAACGAGCTGCCTGGATGAAGCCCAGTAAAAACCCAGATGATGCTCCCAAGATCGCAACTGGGCCCACAGTGTCGACAACCATATCAGAGTTAGAGGCAGCAAGGAGAAGCATTTTGGCTGATGATCACAGAGAAAGGTCTAGTTCTTCACAAGTGGAATCTAAAAAGATTATAGGTAGATTCCCTGGATCTTTCAAAGAATCCTCGGAATTACAGGACCAAAGACAGCTCATGCAGGGTATTCCAGGTTCTCATAAGAAAGATGATGGGAGAATCACTAGCAAAGATCCAAGTCTTATTGGTTATGGATCGAAGGGTCACAAAATTCACTACTCGGGCCCACTGTTGGTTCCATCAAGCAACATGGACCAGGTGTTGAAAGATCATGACCGTCAGATCCAAGAAGCTGGAAGACGAGCTCGCCTCGACAAGGCAAAGCTCAGGAAGATTCAACTTGAAGGGAATCAAATCTCGACCAACTCCTTGATTGTTTCTGGTCGTTGA 2151 46.54 MGCICCKPYAIEDSKESSPRERAASTKASSDLRVSRLASSRREEAVHRPKDLYETNEGRGAVLIDKQVNRSIRPQGGDNFERKREKMEYHVLAHYPGAGSIPRATEGEQIAAGWPAWLAAVAGEAIKGWLPRRADSFERLDKIGQGTYSNVYRARDLDQKKIVALKKVRFDNLEPESVRFMAREIHILRRLNHPNVIKLEGLVTSRMSCSLYLVFEYMEHDLTGLASHPGPKFTEAQVKCYMQQLLQGLEHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASLFDPNQRQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQPYRRRVAETFKDFPAPALALMEMLLSIDPADRGSATSSLKNEFFTTKPLPCDPSSLPKYPPSKEFDAKLRDEESRRQGVDGNKGQRLDLERRGTRESRAVPAPDANAELVLSMQKRQGQSNSKSRSEKFNPHPEEIASGFPMDPPRPSQVVEASVESHEHHPKRASHSGPLAQRAAWMKPSKNPDDAPKIATGPTVSTTISELEAARRSILADDHRERSSSSQVESKKIIGRFPGSFKESSELQDQRQLMQGIPGSHKKDDGRITSKDPSLIGYGSKGHKIHYSGPLLVPSSNMDQVLKDHDRQIQEAGRRARLDKAKLRKIQLEGNQISTNSLIVSGR 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 760275 764332 + Conep09aG0017300.1 Cone9ag0171 444334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0171 716 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0171 716 MobiDBLite consensus disorder prediction 586 600 - -
Cone9ag0171 716 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524(InterPro)
Cone9ag0171 716 SUPERFAMILY Protein kinase-like (PK-like) 131 429 IPR011009 -
Cone9ag0171 716 FunFam probable serine/threonine-protein kinase At1g54610 124 219 - -
Cone9ag0171 716 PANTHER CELL DIVISION PROTEIN KINASE 136 421 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cone9ag0171 716 FunFam probable serine/threonine-protein kinase At1g54610 220 461 - -
Cone9ag0171 716 CDD STKc_CDK9_like 137 421 - -
Cone9ag0171 716 MobiDBLite consensus disorder prediction 421 548 - -
Cone9ag0171 716 ProSiteProfiles Protein kinase domain profile. 137 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0171 716 SMART serkin_6 137 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0171 716 MobiDBLite consensus disorder prediction 586 624 - -
Cone9ag0171 716 MobiDBLite consensus disorder prediction 36 50 - -
Cone9ag0171 716 Pfam Protein kinase domain 137 421 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0171 716 Gene3D Phosphorylase Kinase; domain 1 124 219 - -
Cone9ag0171 716 MobiDBLite consensus disorder prediction 13 50 - -
Cone9ag0171 716 Gene3D Transferase(Phosphotransferase) domain 1 220 460 - -
Cone9ag0171 716 MobiDBLite consensus disorder prediction 489 503 - -
Cone9ag0171 716 MobiDBLite consensus disorder prediction 440 475 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0681 Cone-Chr19:5761303 Cone9ag0171 Cone-Chr9:760275 1.75E-230 dispersed
Cone3ag1421 Cone-Chr3:33002881 Cone9ag0171 Cone-Chr9:760275 1.83E-231 dispersed
Cone4ag1171 Cone-Chr4:9962722 Cone9ag0171 Cone-Chr9:760275 3.71E-210 dispersed
Cone5ag1291 Cone-Chr5:7206336 Cone9ag0171 Cone-Chr9:760275 6.81E-65 dispersed
Cone7ag0178 Cone-Chr7:747060 Cone9ag0171 Cone-Chr9:760275 2.86E-213 dispersed
Cone7ag0959 Cone-Chr7:7453099 Cone9ag0171 Cone-Chr9:760275 7.51E-207 dispersed
Cone7ag1466 Cone-Chr7:10327736 Cone9ag0171 Cone-Chr9:760275 4.45E-80 dispersed
Cone9ag0171 Cone-Chr9:760275 Cone9ag1212 Cone-Chr9:8784788 7.54E-51 dispersed
Cone10ag1351 Cone-Chr10:10524409 Cone9ag0171 Cone-Chr9:760275 6.64E-237 wgd
Cone12ag1466 Cone-Chr12:10498908 Cone9ag0171 Cone-Chr9:760275 1.46E-207 wgd
Cone14ag1063 Cone-Chr14:8962512 Cone9ag0171 Cone-Chr9:760275 0 wgd
Cone3ag1420 Cone-Chr3:32999063 Cone9ag0171 Cone-Chr9:760275 3.78E-194 wgd
Cone6ag0146 Cone-Chr6:740829 Cone9ag0171 Cone-Chr9:760275 0 wgd
Cone8ag1512 Cone-Chr8:11426498 Cone9ag0171 Cone-Chr9:760275 2.75E-203 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83157 PF02475 Met_10 5.10E-60 CL0063 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0171 - - - 0.0