Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0176 ATGGCTTCTTCCAACGCCCCTCTCACGACACCAACTAAATCTCCATCAGGAAAATCAGCCTCAATGTCCAGAAAACACCATATCTCGTCCGAGACAAGGTCCAGATTTGAGGCCTACAATCGTCTCCAGGCAGCGGCAGTGGCATTTGGCGAGAAGCTTCCGATTCCTGAGATCGTAGCCATAGGTGGCCAATCCGACGGAAAAAGCTCTCTCCTTGAGGCCCTCTTAGGGTTTCGATTCAATGTCCGTGAGGTTGAGATGGGCACGCGTAGACCTCTGATCCTCCAAATGATCCACGACCCGACCGCTTTAGAGCCTCGCTGTCGATTTCAGGAGGAGGATTCTGAAGAATATGGAAGTCCGGTGGTTTTGGCGTCTGCAATAGCAGATCTTATAAAGTCAAGAACTGAGGCATTACTGAAGAAAACCAGAACTGCAGTTTCTTCTAAGCCAATTGTGATGAGGGCGGAATATGCACATTGTCCTAACCTGACCATTATAGACACCCCTGGATTTGTTCTCAAGGCAAAGAAGGGAGAACCAGAAAGCACGCCGGAAGAAATTCTTTCAATGGTGAAGTCATTGGCAAGTCCTCCTCACCGGATTCTGTTGTTTCTTCAGCAGAGTAGTGTGGAGTGGTGCTCTTCATTGTGGCTGGACTTCATTCGTGAAATTGATCCAACCTTCAGACGGACAATTATCGTTGTCTCCAAATTTGATAATCGCCTCAAGGAGTTCAGTGACAGGTGGGAAGTGGATAGGTATTTGAGTGCAAGCGGTTACTTAGGAGATAATACCCACCCATTCTTTGTGGCACTGCCAAAGGACAGGAACACTGTTTCAAATGATGAATTCCGGAGACAGATTTCTCAGGTTGACACGGAAGTTCTTAGACATCTGCGCGAAGGTGTGAATGGAGGATTTGATGAAGAAAAGTTCAGGTCAGTCATTGGTTTTGGATGCCTGAGAGAGTATCTGGAATCTGAGCTTCAGAAGAGATACAAAGAAGCTGCTCCAGCAACTCTAGCTCTGCTAGAGCAGCGATGCAGTGAAGTTGCCTCTGAACTTGCCCTAATGGATTCTAAAATTCAGGCCACTTCTGATATTGCTCATCTTAGAAGATCTGCAATGTTGTATACAGCTTCTGTCAGTAACCATGTGGGTGCCTTGATTGATGGGGCAGCAGATCCTGCCCCCGAACAATGGGGAAAAACATCTGTAGAGGAGCAATCAGGAAGTGGAATTGGAAGCTGGCCTGGTGTTTCTGCCGATTTGAAGCCTCCAAATTCTACTCTTCGATTGTACGGTGGTGCTGCTTTTGAAAGAGTAATGCTCGAGTTTCGTTCTGCAGCATATTCCATCAAGTGCCCCTCCGTTTCAAGGGAGAAGGTGGCAAATATACTACTTGCCCATGCAGGTAGAGGTGGAGGCAGAGGAGTAATAGAAGCCGCTGCTGAAATTGCTCGTGCTGCTGCAAGATCATGGCTCGCTCCTCTTCTGGACACTGCTTGTGATCGGCTCGCTTATGTTCTGGAGAATCTTTTTGATCTTGCACTAGAAAGAAATTGCACCCGTGACTCAGAATACACAAAGAAGCGAGAAAACATGGATGGGTACGTTGGTTTTCATGCTGCTTTAAGATGTGCTTACATTCGGTTCATAAAGGATCTTGCCAAGCAATGCAAACAGTTAGTTAGACACCACCTTGATTCCGTTACTAGCCCCTACTCACTTGTCTGTTATGAGAATGACTTTGAAGGAGGAGTAGGAGGGTTTGACTCGAGTGCAGCCATTTCTCACAAATTCAACCAAACCGGTTCATTTTCTTTTGAGTTATCTGATCAGGGAGTTGGTTCATCGTCTTGTGATGAGATAATGAAGGATCAAGAGAATGTACCTCCAGAAAATAACAACATACAACAAATTACGCCCGGGAAAGGCACAGCGTCTAGGGAAGCCCTCTGCGAGAGTCAAATGACTGTGCCAGAGACCCCCTCACCTGACCAGCCTGGTGATGTATTTCATGGTGGCGGAAAGAAGAAAGAGATTGGAAATGGCATTGAAGTTGGAAGAAAACGAATTTCAAGAATGACAGGCAATAGAGATTCTATCCGAATGAGAGGTCAGGAGGGAGGTGGTGGAATCCTATTTGGAAATGGGGAGGTCGGCTCGAGGTCAAGTTCGGCTTATGCTGAGATTTGCTCATCAGCTGCACAACACTTTTCACGAATACGGGAAGTTCTTGTCGACCGAAGTGTTACATCAGCCTTGAATTCTGGATTTTTAACACCTTGTCGGGAAAGGCTAATGGTGGCACTGGGATTAGATCTATTTGCAGTAAATGATGAAAAATTTATGGTGATGTTTGTTGCTCCTGGTGCTATTGACATACTGCAGAGTGACAAACAGTCTCTTCAAAAGCGCCAAAAAATACTGCAGACTTGCTTGAACGAGTTCAAAACCATCGCTCTGTCGCTTTGA 2481 46.15 MASSNAPLTTPTKSPSGKSASMSRKHHISSETRSRFEAYNRLQAAAVAFGEKLPIPEIVAIGGQSDGKSSLLEALLGFRFNVREVEMGTRRPLILQMIHDPTALEPRCRFQEEDSEEYGSPVVLASAIADLIKSRTEALLKKTRTAVSSKPIVMRAEYAHCPNLTIIDTPGFVLKAKKGEPESTPEEILSMVKSLASPPHRILLFLQQSSVEWCSSLWLDFIREIDPTFRRTIIVVSKFDNRLKEFSDRWEVDRYLSASGYLGDNTHPFFVALPKDRNTVSNDEFRRQISQVDTEVLRHLREGVNGGFDEEKFRSVIGFGCLREYLESELQKRYKEAAPATLALLEQRCSEVASELALMDSKIQATSDIAHLRRSAMLYTASVSNHVGALIDGAADPAPEQWGKTSVEEQSGSGIGSWPGVSADLKPPNSTLRLYGGAAFERVMLEFRSAAYSIKCPSVSREKVANILLAHAGRGGGRGVIEAAAEIARAAARSWLAPLLDTACDRLAYVLENLFDLALERNCTRDSEYTKKRENMDGYVGFHAALRCAYIRFIKDLAKQCKQLVRHHLDSVTSPYSLVCYENDFEGGVGGFDSSAAISHKFNQTGSFSFELSDQGVGSSSCDEIMKDQENVPPENNNIQQITPGKGTASREALCESQMTVPETPSPDQPGDVFHGGGKKKEIGNGIEVGRKRISRMTGNRDSIRMRGQEGGGGILFGNGEVGSRSSSAYAEICSSAAQHFSRIREVLVDRSVTSALNSGFLTPCRERLMVALGLDLFAVNDEKFMVMFVAPGAIDILQSDKQSLQKRQKILQTCLNEFKTIALSL 826
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 774554 778091 + Conep09aG0017800.1 Cone9ag0176 444339

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0176 826 MobiDBLite consensus disorder prediction 660 682 - -
Cone9ag0176 826 FunFam Dynamin-related protein 5A 24 390 - -
Cone9ag0176 826 SMART dynamin_3 32 266 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone9ag0176 826 MobiDBLite consensus disorder prediction 400 422 - -
Cone9ag0176 826 PANTHER DYNAMIN 37 721 IPR022812 GO:0003924(PANTHER)|GO:0005737(PANTHER)|GO:0005874(PANTHER)|GO:0008017(PANTHER)|GO:0016020(PANTHER)
Cone9ag0176 826 Pfam Dynamin family 58 238 IPR045063 -
Cone9ag0176 826 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 52 339 IPR030381 GO:0005525(InterPro)
Cone9ag0176 826 MobiDBLite consensus disorder prediction 1 32 - -
Cone9ag0176 826 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 346 IPR027417 -
Cone9ag0176 826 Gene3D - 22 385 IPR027417 -
Cone9ag0176 826 PRINTS Dynamin signature 55 73 IPR022812 -
Cone9ag0176 826 PRINTS Dynamin signature 158 175 IPR022812 -
Cone9ag0176 826 PRINTS Dynamin signature 80 97 IPR022812 -
Cone9ag0176 826 PRINTS Dynamin signature 208 226 IPR022812 -
Cone9ag0176 826 PRINTS Dynamin signature 227 243 IPR022812 -
Cone9ag0176 826 CDD DLP_1 53 339 IPR001401 GO:0003924(InterPro)|GO:0005525(InterPro)
Cone9ag0176 826 MobiDBLite consensus disorder prediction 1 23 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0176 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone9ag0176 Cone-Chr9:774554 Cone9ag0859 Cone-Chr9:4193511 2.45E-20 dispersed
Cone6ag0150 Cone-Chr6:756007 Cone9ag0176 Cone-Chr9:774554 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g204 . Blo03g01548 . . . Bpe08g01021 . . . . . . . . Sed06g0329 . Cpe02g00700 Bhi09g03433 Tan01g4390 Cmetu01g0301 . Hepe01g1389 Mch11g1066 . Cla11g01759 Cam11g1826 Cec11g1846 Cco11g1853 Clacu11g1986 . Cre11g2203 Cone6ag0150 Cone9ag0176 . . Lsi04g02069 Csa04g02340 Chy07g00071 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011471 0 1 1 0 1 0 1 1 0 1 1 0 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 2 1 2 27