Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0179 ATGGAAGAACCAGAAGATAAGATGTTAGAAATCGTAGATTCGGATAGTAATAATAACACGGTTTCATTGGATGCTAATAATCATGAAGGAGAAAAAGATGAAACAGAGGAATCAAGTTGGTGGAAGAGACTGCTGGACATAGAAGAGGCCAAGAAACAGATACTTTTCTCACTACCCATAATTCTTACTAATGTTTCTTATTACTTGATCTTTCTGGTTTCTGTCATGTTTGCTGGTCGTCTTGGCGAGCTCGAGCTTGCAGGTGTAACTCTAGCCAATTCGTGGGCCTACATTACCGGATTTTCTTGCATGACAGGACTAAGTGGTGCACTCGAGACTCTTTGTGGGCAAGGATATGGTGCAAAAATGTATAGAATTTTGGGGATATATCTACAAGCCTCATGCATCATATCCTTCATCTTCTGCCTCATCATATCCATTGCATGGTTCTATACAGAGCCCATACTGTTCTTATTACATCAAGATCCGGTAATATCAAAGACGGCCGCTCTCTATATAAGGTTTCTCATTCCAGGACTATTTGCATACGGCTTCTTACAGAACATCTTGAGGTTTCTTCAGACACAGTCCGCTGTAACGCCTTTGCTCATCTTCTCGCTACTCCCTCTCATCATTCACATCGGCATAGCACATACGCTTGTTAATAGAACCTCTCTTGGTTTTAAAGGAGCTTCGATTGCTGCTTCGATTTCGCTATGGATTGCATTCCTTGTCTTGTCTTTATATGTGATTAAAGCAAAGAGGTTTGAACATACATGGGAAGGATTTTCTTTAGAATCATTTAGTTACATTCTTAAGAACTTGAAACTAGCCTTGCCTTCTGCAGCAATGTTATGTTTGGAGGAATGGGCATTTGAGATTCTGGTTTTCTTATCGGGATTGACTCCCAACTCGGAAACAAACACTTCATTGATTGCAATATGTGTGAACACACAAACCATCGCGTACATGATTGTTTACGGACTCGGAGCTGGTGTAAGCACAAGAGTGTCAAATGAATTAGGAGCAGGCAATCCCGGAAGAGCCAGAAACGCGATTTCCGTCACTCTCAAGCTCTCTGTCCTGCTCGGACTTATAGCCGTGCTGGAAGTATTATGCGGACACGACATTTGGGTCGGACTTTTTACTCATAGTCCAGTGATAAAAGAAAAATTTGCTTCCATGACACCCCTGCTTGCAATTTCATTACTAGTTGATGCAGTGCAAGGTGTCTTATCAGGGGTGGCTAGAGGCTGTGGATGGCAATACTTAGGTGTGTACGTAAACCTGGTCACATTCTACTTTATTGGTGTCACTACAGCAGCCATTGTTGGATTTAAGATGAAATTATATGCTAAGGGCTTATGGATTGGCTTGATCTGTGGTCTCTCCTGCCAAACTGTTGCTCTGTTCTTCATCACAGTATGCTCAAAATGGAGCAACATCGAACTACGTGACAACAAAGATAAGGAAAATCCGCTTCTGGTGGAACTCAGTAGTTGA 1503 41.92 MEEPEDKMLEIVDSDSNNNTVSLDANNHEGEKDETEESSWWKRLLDIEEAKKQILFSLPIILTNVSYYLIFLVSVMFAGRLGELELAGVTLANSWAYITGFSCMTGLSGALETLCGQGYGAKMYRILGIYLQASCIISFIFCLIISIAWFYTEPILFLLHQDPVISKTAALYIRFLIPGLFAYGFLQNILRFLQTQSAVTPLLIFSLLPLIIHIGIAHTLVNRTSLGFKGASIAASISLWIAFLVLSLYVIKAKRFEHTWEGFSLESFSYILKNLKLALPSAAMLCLEEWAFEILVFLSGLTPNSETNTSLIAICVNTQTIAYMIVYGLGAGVSTRVSNELGAGNPGRARNAISVTLKLSVLLGLIAVLEVLCGHDIWVGLFTHSPVIKEKFASMTPLLAISLLVDAVQGVLSGVARGCGWQYLGVYVNLVTFYFIGVTTAAIVGFKMKLYAKGLWIGLICGLSCQTVALFFITVCSKWSNIELRDNKDKENPLLVELSS 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 791541 793541 + Conep09aG0018100.1 Cone9ag0179 444342

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0179 500 CDD MATE_eukaryotic 49 480 IPR045069 GO:0042910(InterPro)|GO:1990961(InterPro)
Cone9ag0179 500 MobiDBLite consensus disorder prediction 1 34 - -
Cone9ag0179 500 PANTHER MULTIDRUG RESISTANCE PROTEIN 46 480 - GO:0016020(PANTHER)|GO:0022857(PANTHER)
Cone9ag0179 500 Pfam MatE 59 216 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone9ag0179 500 Pfam MatE 280 441 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
Cone9ag0179 500 NCBIfam MATE family efflux transporter 59 456 IPR002528 GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0042910(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0179 K03327 - - mdm:114824036 650.203
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0155 Cone-Chr6:772311 Cone9ag0179 Cone-Chr9:791541 6.92E-239 dispersed
Cone9ag0179 Cone-Chr9:791541 Cone9ag0440 Cone-Chr9:2035644 5.80E-105 dispersed
Cone6ag0154 Cone-Chr6:771290 Cone9ag0179 Cone-Chr9:791541 6.42E-59 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g196 . . . . Bpe09g00238 . . Bma13g00945 Cmo16g00434 . . . . . . Cpe06g00682 . . . . . . . . . . . . . . . . Cone9ag0179 . . Lsi04g02064 Csa04g02334 Chy07g00066 . . Blo10g00758 . . . . . . . . . . Cma16g00400 . Car16g00366 . . . . . . . . . Cla05g01005 Cam05g1094 Cec05g1104 Cco05g1097 Clacu05g1090 Cmu05g1041 Cre05g1114 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001632 1 2 4 2 2 0 2 2 0 2 1 2 2 2 2 2 1 2 2 1 1 3 4 3 4 2 2 4 8 2 67