Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0181 ATGGGGTTTCTAGGGTTTCTTCCAACAACTTTCTTCAACTGGGTATTCTTTACCTGCCTTCTTTCTTCATCCTTGTGTCTAAAAACCCTAACCCATGCCTGCGATTCCAGTGATCTTGTGGCCTTGAAGAACTTTGCAGGAAACCTCACAAATGGCTCCATCATTTCAACATGGTCTAATGAATCAGTTTGCTGCAAATGGGATGGTGTTTTTTGCGGGAATTCAACCAATGGATCAATCACTAACAGAGTTACTAAATTGATACTTTCCAATAAGGGTCTTAAAGGAAACATTTCAGCCTCATTGGGTAGATTAGATCAGCTAATATGGCTTGATCTTTCTCACAATCATCTGGAAGCAAAGTTGCCTGCAGAATTTTCAAACTTGAAGCAGCTCAAAGTTCTTGATTTGAGCCATAACATGTTATCAGGACCGGTTGATGAAGCACTTTCTGGGTTGGTTTCTGTTCAGAGACTCAACATCTCTAGCAATTCATTCACTGGGAAATTATTTGACCTCAATGGATTTCAATATCTGAATGTTCTTAACATAAGCAACAACTCTTTCGCTGGCCGGTTAGGTTCGAAATTATGCAGTTCTTCAGATGGAATTACTGTTCTTGATTTGTCTGAGAACCTTTTTTCCGGTAGTCTTGAAAGCTTGGAGAACTGCAGCTCATCTCTTCAACAATTCCATGCCGATCACAATTTCTTAGAAGGGAATCTTCCGGATTCTTTGTACTTATTATCGGCTTTAGAGCAACTTTCAATATCTGGGAATAACTTCTCAGGCGTTTTAAGCATGGAGTTGAGTAAGCTCTCTCGACTTAAAAACTTGATAATTTTTGGAAATCAACTTTCTGGTGAAATTCCAGATGTGTTTGAGAACCTTCCACTACTAGAAGAGTTTATTGCATATTCGAATTTGTTTTCCGGACCATTGCCTTCGACTTTATCACTATGCTCAAAGCTTAGAGTTCTTGATCTTAGGAACAATTCTCTAGATGGTTTTATTGATCTTAACTTTACCGGATTAGCACAACTCTCTACACTTGATCTTGCTTCTAATCATTTTAATGGGTCCCTTCCAAATTCTCTATCTAATTGTCATGAATTGGAAGTTCTGAGCCTTGCTAGGAATCACTTAACCGGCACAATACCTGAAAATTACACAAAGCTCTCATCTCTATGGTTTCTGTCCTTGTCCAACAATAGCTTTGTGAATCTGTCTGCTGCATTATCTGTTCTACAAGAATGCAAAAATCTAACCTTTCTTATTCTTACTAAGAATTTTCATGGTGAGGATTTTCCTAGTAATGTGACCGGTTTTGAAGGGTTATCGCTCTTAGCACTCGGGAATTGTGGTCTTAAAGGCCAAATCCCAGTTTGGTTATTAACTTGCAAGAAATTAAGTGTCCTTGATTTGTCTTGGAATCACCTTCATGGTAGTATTCCTTTCTGGATTGGCAAGATGGAGAATATGTTCTATTTAGACTTCTCAAACAATTCTCTCACTGGAGAAATCCCAAAAAGCTTGACGGGTCTCAAGGCCCTTACTTCTGCAAACTGCAGTTGGCAGTATATTACAGCATCTGCTGGAATTCCGCTATACGTAAAGCGAAATCAGAGTTCGAGGGGCTTACAATACAACCAAGCGTCAAGTTTTCCTCCATCAATTTACTTGAACAATAATGGAATAAATGGAACAATCTGGCCTGAATTCGGGCAACTGAAGCAGCTCCATGTTTTAGATTTGAGCCAAAACAACATTACGGGGACAATTCCTAGCTCCATTTCAGAGATGGAGAATCTGGAACTGTTAGATTTATCGAATAACGATCTTTATGGATCGATCCCTCCATCATTTAACAAGCTCACATTCTTGTCAAAGTTTAGTGTGGCAAACAATCATTTGAAGGGAGCAATACCAACTGGAGGACAGTTCTTAAGCTTTCCCAGCTCAAGCTTTGAGGGTAATCCAGGACTTTGTGGAGAAATCGAATTTCAATGTGGTGATGTTAATGGCACAGATTTTAAGCCCCAAAAGCGAACTACTTCAAAGACTAAATTTGGTAGAATCAGCATTCTTTGTATAGCAATCAGTATAGGAATCGGCATTGCCTTGCTCCTTGCTGTTGTTCTACTCAAGATCTTAAGGAAGCATGTTAGAAGTCAGACCGAGGATTTCACTGAAGAATTCACTATGCCACATAGATTATCTGGATCTCTAGGGTCTTCAAAATTGGTGGTTTTTCATATTACAGATTGCATTGATCTTACCATAGCAGACTTGATGAAAGCTACTAGCAATTTCAATCAAGCCAATATAATTGGTTGTGGTGGATTTGGTCTGGTCTACAAAGCCAATTTCCCAAATGGCTGTAAAGCTGCCGTGAAAAGACTTTCTGGAGATTGTGGTCAGATGGAAAGGGAATTCCAAGCTGAGGTGGAGGCCCTCTCAAGAGCTCAACACAAGAACCTTGTCTCTCTCCAAGGATATTGCCGGCATGGAAATGACAGGTTGTTAATCTATTCCTACATGGAAAATGGGAGTCTTGACTATTGGCTTCATGAAAGTGAAGACAGAGGCTCATTTCTAAAATGGGATCTTAGACTCAAAATCGCTCAAGGAGCGGCTCGAGGATTAGCCTACTTGCATAGAGAATGCAAGCCGCACATTATCCATCGTGATGTGAAATCAAGCAATGTGCTTTTGGACGAGCGGTTTGAGGCCCATCTGGCTGATTTTGGCCTGGCCCGCCTACTTCATCCTTACGATACACATGTCACGACGGATTTGGTTGGGACATTGGGGTATATTCCTCCAGAATATAGTCAGACATTAACTGCAACATGCAGGGGCGATGTCTATAGTTTTGGAGTCGTTCTGCTTGAGCTTCTTACAGGAAGGAGGCCGGTTGAAGTGCGCAAAGGGAAAAATTGTAGGGATTTAGTGTCTTGGGTTTTTCAGATGAAAGGTGAGAGGAGGGAGGAGGAAATTATTGATTCTGGGATTTGGAATAAGGAGCATGAGAAGCAGGTTTTAGAAGTGCTTGGTGTTGCTTGTAAATGCTTAGATAAAGATCCAAGGCAGAGACCTGGTATAGAAGAGGTTGTTTCGTGGCTTGAAGTTGTTGGATTTCAGGTTTCTCAACAATGA 3159 40.55 MGFLGFLPTTFFNWVFFTCLLSSSLCLKTLTHACDSSDLVALKNFAGNLTNGSIISTWSNESVCCKWDGVFCGNSTNGSITNRVTKLILSNKGLKGNISASLGRLDQLIWLDLSHNHLEAKLPAEFSNLKQLKVLDLSHNMLSGPVDEALSGLVSVQRLNISSNSFTGKLFDLNGFQYLNVLNISNNSFAGRLGSKLCSSSDGITVLDLSENLFSGSLESLENCSSSLQQFHADHNFLEGNLPDSLYLLSALEQLSISGNNFSGVLSMELSKLSRLKNLIIFGNQLSGEIPDVFENLPLLEEFIAYSNLFSGPLPSTLSLCSKLRVLDLRNNSLDGFIDLNFTGLAQLSTLDLASNHFNGSLPNSLSNCHELEVLSLARNHLTGTIPENYTKLSSLWFLSLSNNSFVNLSAALSVLQECKNLTFLILTKNFHGEDFPSNVTGFEGLSLLALGNCGLKGQIPVWLLTCKKLSVLDLSWNHLHGSIPFWIGKMENMFYLDFSNNSLTGEIPKSLTGLKALTSANCSWQYITASAGIPLYVKRNQSSRGLQYNQASSFPPSIYLNNNGINGTIWPEFGQLKQLHVLDLSQNNITGTIPSSISEMENLELLDLSNNDLYGSIPPSFNKLTFLSKFSVANNHLKGAIPTGGQFLSFPSSSFEGNPGLCGEIEFQCGDVNGTDFKPQKRTTSKTKFGRISILCIAISIGIGIALLLAVVLLKILRKHVRSQTEDFTEEFTMPHRLSGSLGSSKLVVFHITDCIDLTIADLMKATSNFNQANIIGCGGFGLVYKANFPNGCKAAVKRLSGDCGQMEREFQAEVEALSRAQHKNLVSLQGYCRHGNDRLLIYSYMENGSLDYWLHESEDRGSFLKWDLRLKIAQGAARGLAYLHRECKPHIIHRDVKSSNVLLDERFEAHLADFGLARLLHPYDTHVTTDLVGTLGYIPPEYSQTLTATCRGDVYSFGVVLLELLTGRRPVEVRKGKNCRDLVSWVFQMKGERREEEIIDSGIWNKEHEKQVLEVLGVACKCLDKDPRQRPGIEEVVSWLEVVGFQVSQQ 1052
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 798380 801538 + Conep09aG0018300.1 Cone9ag0181 444344

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0181 1052 SMART LRR_typ_2 105 128 IPR003591 -
Cone9ag0181 1052 SMART LRR_typ_2 577 600 IPR003591 -
Cone9ag0181 1052 SMART LRR_typ_2 249 272 IPR003591 -
Cone9ag0181 1052 SMART LRR_typ_2 601 624 IPR003591 -
Cone9ag0181 1052 SMART LRR_typ_2 345 369 IPR003591 -
Cone9ag0181 1052 SMART LRR_typ_2 129 152 IPR003591 -
Cone9ag0181 1052 SMART LRR_typ_2 393 416 IPR003591 -
Cone9ag0181 1052 SUPERFAMILY Protein kinase-like (PK-like) 752 1045 IPR011009 -
Cone9ag0181 1052 Pfam Protein kinase domain 772 1039 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0181 1052 CDD STKc_IRAK 777 1043 - -
Cone9ag0181 1052 SMART serkin_6 771 1042 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0181 1052 PRINTS Leucine-rich repeat signature 601 614 - -
Cone9ag0181 1052 PRINTS Leucine-rich repeat signature 132 145 - -
Cone9ag0181 1052 Gene3D Ribonuclease Inhibitor 301 368 IPR032675 -
Cone9ag0181 1052 FunFam Leucine-rich repeat receptor-like protein kinase 847 1052 - -
Cone9ag0181 1052 SUPERFAMILY L domain-like 34 316 - -
Cone9ag0181 1052 ProSitePatterns Protein kinases ATP-binding region signature. 777 799 IPR017441 GO:0005524(InterPro)
Cone9ag0181 1052 ProSiteProfiles Protein kinase domain profile. 771 1045 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone9ag0181 1052 Gene3D Ribonuclease Inhibitor 369 676 IPR032675 -
Cone9ag0181 1052 Pfam Leucine rich repeat N-terminal domain 36 72 IPR013210 -
Cone9ag0181 1052 SUPERFAMILY L domain-like 456 663 - -
Cone9ag0181 1052 FunFam Tyrosine-sulfated glycopeptide receptor 1 342 675 - -
Cone9ag0181 1052 Gene3D Phosphorylase Kinase; domain 1 720 846 - -
Cone9ag0181 1052 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 742 846 - -
Cone9ag0181 1052 Gene3D Transferase(Phosphotransferase) domain 1 847 1048 - -
Cone9ag0181 1052 Pfam Leucine Rich Repeat 469 491 IPR001611 GO:0005515(InterPro)
Cone9ag0181 1052 Pfam Leucine Rich Repeat 276 297 IPR001611 GO:0005515(InterPro)
Cone9ag0181 1052 Pfam Leucine Rich Repeat 496 515 IPR001611 GO:0005515(InterPro)
Cone9ag0181 1052 Pfam Leucine Rich Repeat 252 273 IPR001611 GO:0005515(InterPro)
Cone9ag0181 1052 Pfam Leucine Rich Repeat 323 345 IPR001611 GO:0005515(InterPro)
Cone9ag0181 1052 Pfam Leucine Rich Repeat 348 369 IPR001611 GO:0005515(InterPro)
Cone9ag0181 1052 Pfam Leucine Rich Repeat 372 392 IPR001611 GO:0005515(InterPro)
Cone9ag0181 1052 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 415 1044 IPR051564 GO:0016020(PANTHER)
Cone9ag0181 1052 Pfam Leucine rich repeat 558 614 IPR001611 GO:0005515(InterPro)
Cone9ag0181 1052 Pfam Leucine rich repeat 108 165 IPR001611 GO:0005515(InterPro)
Cone9ag0181 1052 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 73 311 - -
Cone9ag0181 1052 Gene3D Ribonuclease Inhibitor 33 300 IPR032675 -
Cone9ag0181 1052 SMART LRR_sd22_2 577 606 - -
Cone9ag0181 1052 SMART LRR_sd22_2 129 155 - -
Cone9ag0181 1052 SMART LRR_sd22_2 321 342 - -
Cone9ag0181 1052 ProSitePatterns Serine/Threonine protein kinases active-site signature. 893 905 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone9ag0181 1052 SUPERFAMILY L domain-like 229 522 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0181 K27626 - - mdm:103413298 1424.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone4ag1086 Cone-Chr4:9402513 Cone9ag0181 Cone-Chr9:798380 3.45E-141 dispersed
Cone7ag1042 Cone-Chr7:8010250 Cone9ag0181 Cone-Chr9:798380 5.27E-141 dispersed
Cone9ag0181 Cone-Chr9:798380 Cone9ag1263 Cone-Chr9:9346800 2.56E-74 dispersed
Cone15ag0820 Cone-Chr15:5392854 Cone9ag0181 Cone-Chr9:798380 3.69E-72 transposed
Cone14ag1058 Cone-Chr14:8925541 Cone9ag0181 Cone-Chr9:798380 1.55E-241 wgd
Cone6ag0157 Cone-Chr6:780724 Cone9ag0181 Cone-Chr9:798380 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g193 . . . . Bpe09g00240 . . Bma13g00942 Cmo16g00436 . . . . . . . . . . . . . . . . . . . . . . Cone6ag0157 Cone9ag0181 Cone14ag1058 . . . . . . Blo10g00752 . . . . . . . . . . Cma16g00736 . Car16g00368 Cpe14g00338 . . . . . . . . Cla05g01002 . . . . . . . . Chy06g01163 .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83158 PF01412 ArfGap 1.60E-22 No_clan Cone PK