Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0191 ATGGCTCCTAGAGATAGATCCGGCAACGGTGGGGGATCCAACAACCCAAACCTGGTTCCAGCCTCTATGGAGATCCGATACAGAGGAGTGAGAAAGAGGCCGTGGGGTCGTTACGCGGCGGAGATCCGTGATCCTGGCAAGAAGACCCGCGTTTGGCTCGGCACATTTGATACGGCTGAGGATGCGGCGCGTGCTTACGATGCGGCGGCGCGTGAGTTCAGAGGCCCTAAGGCTAAGACTAACTTTCCCACGACGTCAGAACTCATCATCGTCAATAATCAGAAGAATACGAATAACAACTACTCGCCGCGTAGCAGTCCGAGCCAGAGCAGCACGGTTGATTCGTCTTCACCGCCGCCGGTTCCGACACCGTTGGATCTTACTCTTAGCTCACTATCTGGGGGCGCCGCCACCGCCTCCGGTGGGTTTCCCGCCAGTTGCTTCCCTCACTACGGCGGGGTAACAACGCTTCCGATGGCTCGTCCCGTGTTTTTCTTCGACGCTTTTGCACGCGCGGAGCTGAAGAATTCCAGTCTTCGAGAGATCTCTAGGTTCGATCGAGCGGTGGTTGGTGGTTTCAATAAGATCGCAACCGGTGTGACCCAGAGCGACTCAGATTCATCATCCGTCGTTGATTTCGAAAGTACCCATAACGAGAGACCGTTAAATCTTGACCTCAACCTTCCCCCACCGGGAGTTGCTTAA 705 55.46 MAPRDRSGNGGGSNNPNLVPASMEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEDAARAYDAAAREFRGPKAKTNFPTTSELIIVNNQKNTNNNYSPRSSPSQSSTVDSSSPPPVPTPLDLTLSSLSGGAATASGGFPASCFPHYGGVTTLPMARPVFFFDAFARAELKNSSLREISRFDRAVVGGFNKIATGVTQSDSDSSSVVDFESTHNERPLNLDLNLPPPGVA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 828398 829539 - Conep09aG0019300.1 Cone9ag0191 444354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0191 234 FunFam Ethylene-responsive transcription factor 2 26 84 - -
Cone9ag0191 234 MobiDBLite consensus disorder prediction 95 116 - -
Cone9ag0191 234 PRINTS Ethylene responsive element binding protein signature 49 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0191 234 PRINTS Ethylene responsive element binding protein signature 27 38 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0191 234 ProSiteProfiles AP2/ERF domain profile. 26 83 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0191 234 Pfam AP2 domain 26 75 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0191 234 SMART rav1_2 26 89 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0191 234 MobiDBLite consensus disorder prediction 95 129 - -
Cone9ag0191 234 Gene3D AP2/ERF domain 25 85 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0191 234 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 209 - -
Cone9ag0191 234 SUPERFAMILY DNA-binding domain 26 84 IPR016177 GO:0003677(InterPro)
Cone9ag0191 234 MobiDBLite consensus disorder prediction 1 20 - -
Cone9ag0191 234 MobiDBLite consensus disorder prediction 200 234 - -
Cone9ag0191 234 CDD AP2 26 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0191 234 MobiDBLite consensus disorder prediction 200 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1554 Cone-Chr8:11648898 Cone9ag0191 Cone-Chr9:828398 3.31E-32 dispersed
Cone9ag0191 Cone-Chr9:828398 Cone9ag1000 Cone-Chr9:5176381 1.52E-28 dispersed
Cone1ag0177 Cone-Chr1:1000884 Cone9ag0191 Cone-Chr9:828398 3.79E-39 wgd
Cone12ag1475 Cone-Chr12:10549137 Cone9ag0191 Cone-Chr9:828398 2.05E-35 wgd
Cone6ag0166 Cone-Chr6:810460 Cone9ag0191 Cone-Chr9:828398 2.78E-127 wgd
Cone6ag0997 Cone-Chr6:5491872 Cone9ag0191 Cone-Chr9:828398 1.64E-34 wgd
Cone8ag1521 Cone-Chr8:11472003 Cone9ag0191 Cone-Chr9:828398 9.33E-35 wgd
Cone9ag0191 Cone-Chr9:828398 Cone9ag0999 Cone-Chr9:5159303 8.74E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46770 PF00931 NB-ARC 3.30E-37 CL0023 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0191 K09286 - mdm:103427330 159.844