Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0193 ATGTTTGCTGCAGCACATGGAGTACAGGGAGCCATAGATATCTTCAATAGAAGAAAAGATTTCGGTCTACATCTCGACTTGGTCGCATTTCAGACACTGTTAATGTGGTTATGCAGATATAAACATGTGGAAGCTGCAGAGACTCTCTTTCATCTCAAGCTGAATGATCTTCTTTTCCCAGATGATACAAATACTAGAAATATAATCCTTAACGGATGGTGTGTAATGGGTAATGTTCAAGAAGCGAAAAGGTTTTGGAAAGATATCATTCAATCTAAATGTAAGCCAGATATATTTACTTACGGAACGTTCATTAAATCACTGACAGAGAAAGGGAAGTTAGGGACTGCTTTGAAGTTGTTTAGGACAATGTGGGACAAGGGTTTAAACCCAGATATTGTGATCTGCAATAACATCATTGACGCACTCTGTTTCAAGAAGAGAATTCCAGAAGCTTTGGAAATATTTAATGAAATGAATGGTGGAGGGGTCAGTTCAAATGTTGCAACTTACAATTCGTTAACCAAACACCTCTGCAAGATTAGAAGGATCGAGAAGGTTTACGAGCTTTTGGACGAAATGGAAGAGGAGGAGGGGAGTTGTTTGCCGAATTCAGTTACTTGCTGA 627 38.92 MFAAAHGVQGAIDIFNRRKDFGLHLDLVAFQTLLMWLCRYKHVEAAETLFHLKLNDLLFPDDTNTRNIILNGWCVMGNVQEAKRFWKDIIQSKCKPDIFTYGTFIKSLTEKGKLGTALKLFRTMWDKGLNPDIVICNNIIDALCFKKRIPEALEIFNEMNGGGVSSNVATYNSLTKHLCKIRRIEKVYELLDEMEEEEGSCLPNSVTC 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 831920 832546 + Conep09aG0019500.1 Cone9ag0193 444356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0193 208 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 132 166 IPR002885 -
Cone9ag0193 208 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Cone9ag0193 208 Pfam PPR repeat family 62 108 IPR002885 -
Cone9ag0193 208 Pfam PPR repeat family 131 180 IPR002885 -
Cone9ag0193 208 Gene3D Tetratricopeptide repeat domain 110 208 IPR011990 GO:0005515(InterPro)
Cone9ag0193 208 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 62 96 IPR002885 -
Cone9ag0193 208 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 167 197 IPR002885 -
Cone9ag0193 208 Gene3D Tetratricopeptide repeat domain 1 109 IPR011990 GO:0005515(InterPro)
Cone9ag0193 208 NCBIfam pentatricopeptide repeat 66 98 IPR002885 -
Cone9ag0193 208 NCBIfam pentatricopeptide repeat 99 133 IPR002885 -
Cone9ag0193 208 NCBIfam pentatricopeptide repeat 170 199 IPR002885 -
Cone9ag0193 208 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 208 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0193 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone6ag0167 Cone-Chr6:813953 Cone9ag0193 Cone-Chr9:831920 2.31E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g182 . Blo03g01555 . . . Bpe08g01011 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0193 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005725 1 10 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 3 0 1 1 1 1 1 1 1 1 1 1 1 39