Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0197 ATGGAGGCTGGAAATGACACTGATCTCAAGGTTCATGTTTTCTCTTCGTCAACTGAGTTAGTAGAGAAACTGCAAAACAAGTGGAGGCAATTGAAAAAGCAACCATATCCTGCCATGTATTCCAGCAATTTTGGCGGAATCATTCTCGATCCGGCTTTCATGTTGATTCCGATCGATGATCACATGGTTCATAGAGGCCATGGTGTCTTTGATACAGCCATCATCATGAACGGATATTTGTACGAGCTGGATATTCATCTAGATCGGTTCCTAAGATCAGCTTCAAAAGCAAGAATCACATCCCCATTCCCAAAGTCAACTTTTCGAAGTATTCTTATCCAACTAACATCCGCCTCCAACTGCAAAAAGGGGACTTTAAGGTACTGGTTAAGTTCCGGTCCAGGCGATTTCCTGCTCTCTCCATCCGAAGCATCAAAGTCCGAATTTTATGCGGTAGTTATTGATGAAGATTTCTGTCAGTGTAAACAAGGAGTTAAAGTTGTAACATCTACTGTCCCTATGAAACCTCCAGAATTTGCTACAATGAAGAACGTAAACTATCTACCGAACGTGCTTTCAAAAATCGAGGCAGAAGAGAAAGGAGCGTTTGCTTCCATCTGGGTAGATGAACAAGGGTACATAGCAGAAGGTCCAAATGTGAATGTTGCTTTCATAACTGAAGAGAAAGAGCTTGTATTGCCCTTGTTTGATAAGATTCTTTCTGGTTGTACGGCTTTAAGGCTGTTAGAACTAGCCCAAAAGCTTGTCGATCAGGGCCGCCTTAAGGGCATAAAGACCACAAATTTGACAGTTGAGGAAGGTAGAAGTGCAGCTGAGATGATGTATGTCGGAAGTACGCTTCCTTTATTGCCGGTCGTTGCATGGGACGAACAACCTATCGGAGATGGGAATGTTGGAGAAATGACAATGGCGCTATCGGATCTGATTTGGGACGATATGGTTGCCGGCCCTGAAACACGGAGGATCCCTGTCCCATATGTTTGA 1005 43.58 MEAGNDTDLKVHVFSSSTELVEKLQNKWRQLKKQPYPAMYSSNFGGIILDPAFMLIPIDDHMVHRGHGVFDTAIIMNGYLYELDIHLDRFLRSASKARITSPFPKSTFRSILIQLTSASNCKKGTLRYWLSSGPGDFLLSPSEASKSEFYAVVIDEDFCQCKQGVKVVTSTVPMKPPEFATMKNVNYLPNVLSKIEAEEKGAFASIWVDEQGYIAEGPNVNVAFITEEKELVLPLFDKILSGCTALRLLELAQKLVDQGRLKGIKTTNLTVEEGRSAAEMMYVGSTLPLLPVVAWDEQPIGDGNVGEMTMALSDLIWDDMVAGPETRRIPVPYV 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 845400 846699 + Conep09aG0019900.1 Cone9ag0197 444360

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0197 334 Gene3D - 154 328 IPR043132 -
Cone9ag0197 334 PANTHER AMINO-ACID AMINOTRANSFERASE 30 328 IPR050571 GO:0019752(PANTHER)
Cone9ag0197 334 FunFam D-amino-acid transaminase, chloroplastic 16 154 - -
Cone9ag0197 334 Gene3D - 6 153 IPR043131 -
Cone9ag0197 334 Pfam Amino-transferase class IV 68 295 IPR001544 GO:0003824(InterPro)
Cone9ag0197 334 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 45 321 IPR036038 GO:0003824(InterPro)
Cone9ag0197 334 FunFam D-alanine aminotransferase 156 323 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0197 K18482 - - cit:102618166 539.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0608 Cone-Chr20:3587827 Cone9ag0197 Cone-Chr9:845400 2.02E-128 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g177 . . . . . . . . . . . Cma09g00841 . Car09g00754 . . . Bhi09g03466 . . . Hepe01g1411 . . Cla11g01733 Cam11g1803 Cec11g1823 Cco11g1829 Clacu11g1962 Cmu11g1772 Cre11g2179 . Cone9ag0197 . . Lsi04g02043 Csa04g02315 Chy07g00050 Cme07g00568 Blo07g00954 . Bda05g00775 . . Bpe03g00842 . . . . Cmo09g00834 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011556 1 2 1 1 1 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 5 1 1 29