Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone9ag0205 ATGGCACAATTGCCGCCTAAAATACCAATTAGCTCATCTAGCAGTCCGAATTGGCCTCCTTTCATTCACCAACGAATGCCGTCCCTGGCGGCGCCCGATTTCCTTCATTCCACATCAAATAATATCATCCAACCGCCACACCAACAGGAACTGCAGCAGGCCATACCCTTTTCTGGGGCCCACCGGAGGTCGATGAGCGATTCCTTTGTCTTCCTCGAGTCCCCGACCGTGGTGGATGAATGCAGGAATCTTTCTTCCATTATGATGTTCAATAATATTAGCATGCACGGGGAGTCGGGGAACGGTTTCGATAAGCTGGACGACGAGCAGCTCATGTCTATGTTGTCCAATGATCATGACATCATGATGTCGATGCCGGTCACACAAATTTTGTCTTCTAATTCCAACCCTTCCACGCCGTACGATCAAAAAAGCAACGACGAAGATCAGAAACCTACGGCAGCAGATCAAAACCCGCGCCAACCGCTGAAAACCGAACCCGAAGAGGTGGACAGCTCGTGTCAACCCGACTCGCAAACACAGGCACCTCCGACCAATACTACTACTACCTCCAATGGCGATCCCTTCAATGATCCCAAACGGGTTAAGAGAATTATAGCAAATCGACAATCGGCACAGAGGTCACGGGTGAGAAAACTACGATACATATCCGAACTCGAGCGAAGCGTTACGACGTTACAGAGCGAGGTATCGGCATTGTCACCAAGAGTTGCATTTCTAGACCACCAAAGATTGATGCTTAGCGTCGACAATAGTGCTATAAAGCAACGGATTGCGGCTTTGGCTCAAGACAGGATCTTCAAAGATGCTCATCAGGAAGCATTAAAGAAGGAAATAGAGAGATTAAGACAAGTGTACAGCCAGCAAAACCTAACGAAGATGGGGAATCAAAATAACGTACAACAGCAGCCGCCGTCGTCGCCGCAGTAG 951 48.79 MAQLPPKIPISSSSSPNWPPFIHQRMPSLAAPDFLHSTSNNIIQPPHQQELQQAIPFSGAHRRSMSDSFVFLESPTVVDECRNLSSIMMFNNISMHGESGNGFDKLDDEQLMSMLSNDHDIMMSMPVTQILSSNSNPSTPYDQKSNDEDQKPTAADQNPRQPLKTEPEEVDSSCQPDSQTQAPPTNTTTTSNGDPFNDPKRVKRIIANRQSAQRSRVRKLRYISELERSVTTLQSEVSALSPRVAFLDHQRLMLSVDNSAIKQRIAALAQDRIFKDAHQEALKKEIERLRQVYSQQNLTKMGNQNNVQQQPPSSPQ 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 871968 873236 + Conep09aG0020700.1 Cone9ag0205 444368

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone9ag0205 316 Coils Coil 279 299 - -
Cone9ag0205 316 Pfam bZIP transcription factor 200 246 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0205 316 MobiDBLite consensus disorder prediction 130 199 - -
Cone9ag0205 316 PANTHER BASIC LEUCINE ZIPPER 34 1 309 IPR052483 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0045893(PANTHER)
Cone9ag0205 316 SUPERFAMILY Leucine zipper domain 200 254 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0205 316 FunFam Transcription factor VIP1 199 270 - -
Cone9ag0205 316 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 198 250 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0205 316 CDD bZIP_plant_RF2 201 251 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0205 316 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 203 218 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone9ag0205 316 Gene3D - 199 270 - -
Cone9ag0205 316 MobiDBLite consensus disorder prediction 295 316 - -
Cone9ag0205 316 MobiDBLite consensus disorder prediction 172 196 - -
Cone9ag0205 316 SMART brlzneu 196 260 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone9ag0205 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone8ag1245 Cone-Chr8:10426305 Cone9ag0205 Cone-Chr9:871968 3.82E-09 dispersed
Cone8ag1416 Cone-Chr8:11073062 Cone9ag0205 Cone-Chr9:871968 1.18E-45 dispersed
Cone14ag1040 Cone-Chr14:8779291 Cone9ag0205 Cone-Chr9:871968 8.20E-55 wgd
Cone15ag1029 Cone-Chr15:8550755 Cone9ag0205 Cone-Chr9:871968 1.93E-60 wgd
Cone6ag0180 Cone-Chr6:856491 Cone9ag0205 Cone-Chr9:871968 1.86E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g147 . . . . . . . . . . Cma01g01233 Cma09g00832 Car01g01054 Car09g00746 Sed05g2538 Cpe06g00663 Cpe02g00683 Bhi09g03480 Tan01g4352 Cmetu04g0980 . Hepe01g1419 Mch11g1032 . Cla11g01727 Cam11g1797 Cec11g1818 Cco11g1824 Clacu11g1956 Cmu11g1766 Cre11g2174 Cone6ag0180 Cone9ag0205 Cone14ag1040 Cone15ag1029 Lsi04g02035 Csa04g02307 Chy07g00043 Cme07g00555 . . . . . . . . . Cmo01g01286 Cmo09g00825 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000658 3 3 2 3 3 1 5 3 2 3 2 2 4 3 3 5 2 5 5 3 3 3 3 3 3 3 3 9 3 3 98
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
46772 PF04117 Mpv17_PMP22 4.60E-18 No_clan Cone TF